Gene YpsIP31758_3871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_3871 
SymbolbirA 
ID5384368 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp4362829 
End bp4363788 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content41% 
IMG OID640866900 
Productbiotin--protein ligase 
Protein accessionYP_001402822 
Protein GI153948890 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0340] Biotin-(acetyl-CoA carboxylase) ligase 
TIGRFAM ID[TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.000364778 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAAGATA TCAGGGTCCC CTTACGGTTA GTCAGTATAT TATCTGATGG TTTTTTTCAC 
TCCGGTGAGC AATTGGGTGA AACGTTAGGC ATGAGTCGCG CTGCGATTAA TAAACACATG
CAAACTATTA GAGATTGGGG TTTAGATGTT TTTACTGTCC CAGGTAAGGG CTACAGCTTA
CCTACTTCTA TCCAATTGCT TGATGAACAA AAAATATTAA GTTATTTACC TACGGGTCAC
GTAACAGTAT TACCCGTAGT CGATTCTACT AATCAATATT TATTGGATCG TATTACTGAA
TTGAAATCAG GTGATGCGTG TGTTGCGGAA TATCAGCAAG CAGGACGAGG TCGGCGTGGG
CGTCAATGGG TTTCTCCTTT TGGTGCTAAT CTTTATTTAT CAATGTATTG GCGGCTAGAG
CAAGGTCCTG CTGCTGCAAT GGGATTAAGC TTGGTTGTTG GGATTGTTAT GGCAGAGGTT
CTGCAGAATT TAGGTGCAGA GAAGGTTCGT GTTAAGTGGC CTAATGATCT GTATTTAAAT
GATAAAAAGC TGGCCGGAAT ATTAGTAGAG CTTACTGGGA AAACGGGTGA TGCTGCACAA
TTAGTCATTG GTGCAGGTAT TAACCTGACA ATGCGTGGTT CAGAAACAAA TGCTATTAAC
CAAGATTGGA TAAATTTGCA GGATGCTGGT GTTACTATCG ATCGTAATAA ACTCACTGCT
GAGATCTTAT CTGAATTACG GCTTGCAGTA GTTAAGTTCG AAAATGAGGG CTTATCGGCA
TTCCTTTCTC GTTGGCAGAA AATGGATAAT TATCTTAATA GGCCAGTGAA ATTAATTATT
GGTAATCAAG AGATTTTTGG TATTGCTCGC GGAATCGATC AGCAAGGCGC ATTATTATTA
GAACAAGATG GCAATATAAA GCCTTATATT GGCGGTGAGA TATCCCTTCG AGGTGTCTGA
 
Protein sequence
MKDIRVPLRL VSILSDGFFH SGEQLGETLG MSRAAINKHM QTIRDWGLDV FTVPGKGYSL 
PTSIQLLDEQ KILSYLPTGH VTVLPVVDST NQYLLDRITE LKSGDACVAE YQQAGRGRRG
RQWVSPFGAN LYLSMYWRLE QGPAAAMGLS LVVGIVMAEV LQNLGAEKVR VKWPNDLYLN
DKKLAGILVE LTGKTGDAAQ LVIGAGINLT MRGSETNAIN QDWINLQDAG VTIDRNKLTA
EILSELRLAV VKFENEGLSA FLSRWQKMDN YLNRPVKLII GNQEIFGIAR GIDQQGALLL
EQDGNIKPYI GGEISLRGV