| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3859 |
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| Symbol | rpoC |
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| ID | 5386245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 4345680 |
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| End bp | 4349900 |
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| Gene Length | 4221 bp |
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| Protein Length | 1406 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640866884 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001402810 |
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| Protein GI | 153950601 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAAGCG CAAACTAAGA CCGAAGAGTT TGATGCGATC
AAAATTGCTC TGGCATCGCC AGACATGATC CGTTCATGGT CATTCGGTGA AGTTAAAAAG
CCGGAAACCA TTAACTACCG TACGTTCAAA CCAGAACGTG ACGGCCTTTT CTGCGCCCGT
ATCTTTGGCC CAGTAAAAGA TTACGAATGC CTGTGCGGTA AGTACAAGCG TTTAAAACAC
CGTGGTGTTA TTTGTGAGAA ATGCGGCGTT GAAGTGACTC AAACTAAAGT GCGCCGTGAG
CGTATGGGTC ACATCGAACT GGCTTCTCCA ACTGCGCACA TCTGGTTCCT GAAATCGCTG
CCATCTCGTA TCGGTTTGCT GCTGGATATG CCATTACGTG ACATCGAACG TGTACTGTAC
TTCGAATCCT ATGTGGTTAT TGAAGGCGGT ATGACCAACC TGGAACGTCG CCAGATTCTG
ACTGAAGAGC AGTATCTGGA TGCGTTGGAA GAGTTTGGTG ATGAGTTCGA CGCGAAAATG
GGCGCCGAGG CTATTCAGGC CCTGTTGAAA AACATGGATC TGGAAGCTGA GTGCGAGATC
CTGCGTGAAG AATTGAACGA AACAAATTCT GAAACCAAGC GTAAGAAGCT GACCAAGCGT
ATCAAGTTGC TGGAAGCGTT CGTACAGTCT GGCAACAAGC CAGAGTGGAT GATCCTGACC
GTGCTGCCTG TGTTGCCGCC AGATCTGCGT CCATTGGTTC CGTTGGATGG TGGTCGCTTT
GCGACTTCCG ATCTGAACGA TTTGTATCGT CGCGTGATCA ACCGTAACAA CCGTCTGAAA
CGCCTGCTGG ACTTGGCGGC ACCGGACATC ATCGTACGTA ACGAAAAGCG TATGCTGCAA
GAAGCAGTAG ATGCATTGCT GGATAACGGC CGTCGCGGTC GTGCGATTAC CGGCTCTAAC
AAGCGTCCGT TGAAGTCACT GGCTGACATG ATTAAAGGTA AGCAAGGTCG TTTCCGTCAG
AACTTGCTGG GTAAACGTGT TGACTACTCA GGTCGTTCGG TTATCACCGT TGGTCCATAC
CTGCGTCTGC ATCAGTGCGG TCTGCCTAAG AAAATGGCTC TTGAGCTGTT TAAACCGTTC
ATCTACGGCA AGCTGGAATT GCGTGGTCTT GCTACCACCA TCAAAGCCGC CAAGAAGATG
GTTGAGCGTG AAGAAGCGGT TGTTTGGGAT ATCCTGGATG AAGTTATCCG CGAACACCCA
GTGCTGCTGA ACCGTGCACC AACCCTTCAC CGTTTGGGTA TCCAGGCGTT TGAACCGGTT
CTGATCGAAG GTAAGGCAAT CCAGTTGCAC CCATTGGTTT GTGCGGCATA TAACGCCGAC
TTCGATGGTG ACCAAATGGC TGTCCACGTA CCGCTGACAC TGGAAGCTCA GTTAGAAGCG
CGTGCGTTAA TGATGTCTAC CAACAACATC CTGTCACCCG CGAACGGCGA GCCAATCATC
GTTCCTTCTC AGGACGTTGT ATTGGGTCTG TACTACATGA CCCGCGACTG TGTTAACGCC
AAAGGCGAAG GCATGGTTCT GACTGGCCCG AAAGAAGCTG AGCGTATTTA TCGCGCTGGC
CTGGCATCTC TGCATGCCCG CGTAAAAGTA CGTATTACCG AAGAAATTCG TAATACCGAA
GGCGAAAGCA TTACGCGTAC CAGCATTATC GATACGACTG TAGGTCGTGC TATTTTGTGG
ATGATCGTCC CGCAAGGCCT GCCTTACTCT ATCGTTAACC AGCCGCTGGG TAAAAAAGCT
ATCTCTAAGA TGCTGAACAC TTGTTACCGC ATCTTGGGCT TGAAGCCAAC GGTTATCTTT
GCTGACCAGA TCATGTACAC CGGTTTTGCT TACGCAGCAC GCTCAGGCGC CTCTGTAGGT
ATCGATGACA TGGTTATCCC AGAAGCGAAA GCGGGGATCA TCGAAGAAGC TGAAACTGAA
GTTGCTGAGA TCCAAGAACA GTTCCAATCT GGTCTGGTCA CGGCAGGCGA ACGTTATAAC
AAAGTGATCG ATATCTGGGC TGCGGCTAAC GAACGTGTTG CTAAAGCGAT GATGGATAAC
TTGTCGGTTG AGGATGTTGT CAACCGTGAT GGCGTTGTTG AACAGCAAGT TTCATTCAAC
AGCATCTTCA TGATGGCCGA CTCCGGTGCG CGTGGTTCTG CCGCACAGAT TCGTCAGCTG
GCAGGTATGC GTGGTCTGAT GGCTAAGCCA GACGGCTCGA TCATTGAAAC GCCAATCACC
GCGAACTTCC GTGAAGGTTT GAACGTACTT CAGTACTTCA TCTCAACCCA CGGTGCGCGT
AAAGGTTTGG CGGATACCGC ATTGAAAACT GCGAACTCCG GTTACCTGAC CCGTCGTTTA
GTTGACGTGG CACAGGATCT GGTGGTGACT GAGGATGATT GTGGTACCCA TAACGGTATC
GTGATGACCC CGGTTATCGA AGGTGGTGAT GTTAAAGAGC CACTGCGTGA TCGCGTACTG
GGTCGTGTGA CTGCAGAAGA AGTTATCAAG CCAGGTTCGG CTGATATTCT GGTTCCGCGT
AACACCCTGC TGGACGAAAA ATGGTGTGAT CTGTTAGAAG AAAACTCCGT CGACAGCGTT
AAAGTTCGCT CTGTAGTAAG CTGTGAAACT GACTTCGGTG TGTGTGCTAA CTGCTATGGT
CGCGACCTGG CACGTGGCCA CATCATCAAC AAAGGTGAAG CGGTTGGTGT TATTGCAGCA
CAGTCCATCG GTGAGCCGGG TACTCAGCTT ACGATGCGTA CGTTCCACAT TGGTGGTGCG
GCATCTCGTG CGGCAGCAGA ATCCAGCATC CAGGTTAAGA ACAAAGGCAG CTTGAAACTG
AGCAACGTCA AGTTCGTGAC CAATGCGGCT GGCAAGCTGG TTATTACGTC TCGTAATACC
GAGCTGAAGC TGATCGACGA ATTCGGTCGT ACCAAAGAAA GCTATAAAGT GCCTTACGGT
GCGGTAATGG CTAAAGGCGA TGGCGCAGAA GTTCAGGGCG GCGAAACCGT TGCTAACTGG
GATCCGCACA TCATGCCAGT GGTCACCGAA GTGAGCGGCT TCATTCGCTT CGCCGACATG
GTTGATGGCC AGACCATTAC TCGCCAGACC GACGAACTGA CTGGTTTGTC TTCTCTGGTC
GTTCTGGACA GTGCAGAGCG TACGGGTAGC GGTAAAGACC TGCGTCCAGC ACTGAAAATC
GTTGATGCCA AAGGCAATGA CGTATTGATC CCAGGTACTG ATATGCCTGC TCAATACTTC
CTGCCAGGTA AAGCGATTGT ACAGCTGGAA GACGGTATTC AGATCGGTGC GGGTGATACC
TTGGCGCGTA TTCCTCAGGA ATCAAGCGGT ACCAAGGATA TTACCGGTGG TCTGCCACGT
GTTGCTGACT TGTTCGAAGC ACGTCGTCCG AAAGAGCCTG CAATCCTGGC TGAAATCAGC
GGGATCATCT CGTTCGGTAA AGAGACCAAA GGCAAGCGTC GTCTGGTGAT CTCACCGTTG
GATGGTAGCG ATGCATACGA AGAGATGATT CCGAAATGGC GTCAGCTTAA CGTGTTCGAA
GGTGAAGTTG TGGAACGCGG TGACGTGGTT TCCGATGGCC CAGAATCTCC ACATGACATT
CTGCGTCTGC GTGGCGTTCA CGCGGTTACC CGCTACATCA CCAACGAAGT GCAGGAAGTT
TACCGTCTGC AAGGCGTTAA GATTAACGAT AAACACATTG AAGTTATCGT TCGTCAGATG
CTGCGTAAAG GCACTATCGT TGATGCAGGT AGCACCGACT TCCTGGAAGG CGAGCAGGCA
GAAATGTCCC GCGTTAAAAT CGCTAACCGT AAGCTGGCAG CAGAAGGCAA AATTGAGGCT
ACGTTCACTC GTGACCTGCT GGGTATCACC AAGGCATCCT TGGCGACCGA GTCCTTCATC
TCTGCGGCTT CGTTCCAGGA AACCACGCGC GTTCTTACTG AAGCGGCAGT TGCCGGTAAA
CGTGATGAAT TGCGTGGCCT GAAAGAAAAC GTAATCGTAG GCCGTCTGAT CCCAGCCGGT
ACCGGTTATG CTTATCATCA GGACCGTATG CGCCGTAAAG CACAGGGTGA AGCGCCTGTT
GTTCCACAAG TCAGCGCGGA TGAAGCGACT GCAAACCTGG CCGAATTGCT TAACGCCGGT
TTTGGTAACA ACAAAGGCTA A
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| Protein sequence | MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL
PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERRQIL TEEQYLDALE EFGDEFDAKM
GAEAIQALLK NMDLEAECEI LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERIYRAG
LASLHARVKV RITEEIRNTE GESITRTSII DTTVGRAILW MIVPQGLPYS IVNQPLGKKA
ISKMLNTCYR ILGLKPTVIF ADQIMYTGFA YAARSGASVG IDDMVIPEAK AGIIEEAETE
VAEIQEQFQS GLVTAGERYN KVIDIWAAAN ERVAKAMMDN LSVEDVVNRD GVVEQQVSFN
SIFMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHNGI VMTPVIEGGD VKEPLRDRVL
GRVTAEEVIK PGSADILVPR NTLLDEKWCD LLEENSVDSV KVRSVVSCET DFGVCANCYG
RDLARGHIIN KGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSLKL
SNVKFVTNAA GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVMAKGDGAE VQGGETVANW
DPHIMPVVTE VSGFIRFADM VDGQTITRQT DELTGLSSLV VLDSAERTGS GKDLRPALKI
VDAKGNDVLI PGTDMPAQYF LPGKAIVQLE DGIQIGAGDT LARIPQESSG TKDITGGLPR
VADLFEARRP KEPAILAEIS GIISFGKETK GKRRLVISPL DGSDAYEEMI PKWRQLNVFE
GEVVERGDVV SDGPESPHDI LRLRGVHAVT RYITNEVQEV YRLQGVKIND KHIEVIVRQM
LRKGTIVDAG STDFLEGEQA EMSRVKIANR KLAAEGKIEA TFTRDLLGIT KASLATESFI
SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRKAQGEAPV
VPQVSADEAT ANLAELLNAG FGNNKG
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