| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3830 |
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| Symbol | |
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| ID | 5387710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 4309926 |
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| End bp | 4311443 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640866854 |
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| Product | YscC/HrcC family type III secretion outer membrane protein |
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| Protein accession | YP_001402784 |
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| Protein GI | 153947838 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCTAA TCTATATCAT GAGAAAAATA ACGGGTCTGA TATTACTTTT TTTTGCCACA
TTGTTGCCTT ATGGGAAATT TTCTTATGGA AAAGCGATTC CTTGGCAAGG CGAGCCTTTT
TTTATTTATA GCCGAGGCAT GACAGTTTCT GAATTATTAA AAGATTTGGG GATGAATTAC
GGTATTCCTG TGGTGATCAG TTCGGAAATA AACGAGCACT TTACTGGAAA GATTAGGGAT
AAGACACCTG AAAAAATCCT ATCGGAGTTG GCTGGGCGAT ATAATATAAC GTGGTATTAC
GATGGTGAAA CACTCTATTT TTACCCAGTT CAATCAATCA AGCGGGAGTT TATATCCCCC
GATGGTCTGG CTGCCAATAC GTTAGTTAAA TATCTCCAGC GCGGTGACGT GCTGGCGGGG
AAAAACTGTG CCATAAAAGC GATCCCCCAC CTTGATACCC TTGAGGTCAA GGGAGTGCCT
ATCTGCATCG AACGCGTAAA GTCAGTAAGC AAAATGCTTT CTGAGCAAGT TCGTCACCAA
AACCAAAATA AAGAAACAGT GAAAGTTTTC CCGCTGAAAT ATGCTTCAGC AGCGGATTCA
GATTATCAGT ACCGAGATCA AAACGTCAGA TTACCGGGGT TGGTCAGTGT GTTACGTGAG
TTGAACCAAG GGAATAATTT GCCTTTGGCG GGCGGTAACC AACCAGATGG AAATCAAGCA
AGCTCACCGG TGTTTTCGGC TGATCCTCGG CAAAATGCCG TCATTATTCG CGATCGCCAG
GCTAATATGC CGATTTATCG CAGCTTGATT ACCCAACTGG ATCAGCGGCC AATTCAGATA
GAAATTTCTG TCACTATTAT TGATGTTGAT GCGGGAGATA TCAGCCAACT GGGTGTTGAT
TGGTCTGCAT CTGCTTCTAT TGGTGGAACG GGGGTCTCAT TTAATAGCAC CTTCGCCAAG
AATAATGCTG AAGGCTTTTC TACCGTGATT GGTGATACGG GGAACTTTAT GGTTCGTCTG
AATGCGTTAC AAAAAAATTC ACGAGCCAGA ATTTTATCTC AACCTTCAGT GGTGACCCTG
AACAATATTC AGGCGGTACT GGATAAAAAC GTGACGTTTT ATACCAAGCT GCAAGGTGAG
AAAGTGGCCA AACTTGAATC TGTCACTTCA GGGTCATTAC TGCGAGTGAC GCCAAGAATG
ATCGAGACCG AAGGGGTACA AGAGGTTTTA CTGAATCTCA ATATTCAGGA TGGTCAGCAG
CAAGCTTCTA CCAATAGTAA TGAGCCATTA CCCGAAATAC GAAACTCAGA TATTTCGACG
CAGGCCACGC TACAGGTTGG ACAAAGTTTA CTCTTGGGCG GATTTATTCA GGACACGCAG
ATTGAGTCAC AAAATAAAAT TCCTTTACTG GGCGATATTC CGCTATTAGG TGGGTTGTTC
CGTAGTACAG ATAAACAATC TCACAGCGTG GTCAGACTCT TCCTGATCAA GGCCGTTCCG
GTTAATGCAG GGGAATAA
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| Protein sequence | MSLIYIMRKI TGLILLFFAT LLPYGKFSYG KAIPWQGEPF FIYSRGMTVS ELLKDLGMNY
GIPVVISSEI NEHFTGKIRD KTPEKILSEL AGRYNITWYY DGETLYFYPV QSIKREFISP
DGLAANTLVK YLQRGDVLAG KNCAIKAIPH LDTLEVKGVP ICIERVKSVS KMLSEQVRHQ
NQNKETVKVF PLKYASAADS DYQYRDQNVR LPGLVSVLRE LNQGNNLPLA GGNQPDGNQA
SSPVFSADPR QNAVIIRDRQ ANMPIYRSLI TQLDQRPIQI EISVTIIDVD AGDISQLGVD
WSASASIGGT GVSFNSTFAK NNAEGFSTVI GDTGNFMVRL NALQKNSRAR ILSQPSVVTL
NNIQAVLDKN VTFYTKLQGE KVAKLESVTS GSLLRVTPRM IETEGVQEVL LNLNIQDGQQ
QASTNSNEPL PEIRNSDIST QATLQVGQSL LLGGFIQDTQ IESQNKIPLL GDIPLLGGLF
RSTDKQSHSV VRLFLIKAVP VNAGE
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