| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3819 |
|---|
| Symbol | |
|---|
| ID | 5385477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 4302636 |
|---|
| End bp | 4304684 |
|---|
| Gene Length | 2049 bp |
|---|
| Protein Length | 682 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640866843 |
|---|
| Product | secretion system apparatus protein SsaV |
|---|
| Protein accession | YP_001402773 |
|---|
| Protein GI | 153948139 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4789] Type III secretory pathway, component EscV |
|---|
| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 58 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAGT CAGCACTGGT GCGGGGTTTG ACGATGATCA CCGCGCGGCA GGATATTTTT
TTAGCGGTCA TGTTGCTGGT GGCGGTCTTT ATGATGATCC TGCCACTGCC TACGACGATG
GTGGATTTAC TGATCGCCAT CAATCTTGCC TTCTCCGTCA TTCTCTTAAT GATCTCGATC
TATCTGCGCG ATCCTTTGGA GTTCTCCGTC TTCCCGTCAT TACTGTTGAT CACCACCCTT
TATCGATTGG CACTAACGAT CAGCACCACG CGACTGGTGC TGTTGCAACA TGATGCCGGT
GAGATTGTCG AGGCATTCGG TCAGTTTGTC GTGGGCGGTA ATCTGGCCGT CGGGATGATC
ATTTTTACCA TTATCACGGT GGTCCAATTT ATCGTGATTA CCAAAGGTTC AGAGCGGGTT
GCTGAGGTCA GTGCGCGCTT CTCACTTGAT GGTATGCCGG GTAAGCAGAT GAGCATCGAC
GGTGACATGC GTGCGGGTGC GATCGATTCG GTCGAAGCTA AACGGCTACG GGAGCGGGTA
CAAAAAGAGA GCCGCTTATT TGGTGCTATG GACGGTGCCA TGAAGTTTGT TAAAGGGGAT
GCCATCGCTG GGATCATTGT CATTCTGGTC AATATCATTG GCGGTATCAC TATTGGTGTG
ATGCAACACA AGATGTCCGC GGAAGAGGCG ATGAATACCT ACGCGGTATT ATCGATAGGC
GATGGATTGT GCGCCCAAAT CCCTTCATTA CTGATCTCGA TTACCGCCGG GATTATTGTT
ACCCGGGTTC CTGGCAGCAA CAAACAGAGT CTGGCGAATG AGTTGGCGGT GCAGGTGGGG
CGTCAACCGG ATGCGCTGTG GTTAGCTGCC GCTATTCTGA CGGTGTTCGC CCTGTTACCC
GGCTTCCCGT TCCTGATCTT TATCACTTTG GCGGCCGCGG TTGCGGCTCC GGCTTTTTTA
CTTTATCGGA AGAACCGGCG GATATCGCAG GATGGTCGCG CAAATGGAGG CGGTGAAGAG
GGGGCGGCCA CGGGGCAGCG TATGACGCCT GGTGCCGTAC CGCTGATGCT GCACTGTGCA
TCAAATTTAC ATCACCCGCA TTTAGGGCGC GATATTGATG GCCTACGCTG GCGCTGGTTT
GAGCATCTCG GTGTGCCATT GCCTGAGGTG GAGATCCGCT GTGATCCTAC ATTGGCAGAA
AATACCTTAT CGGTGCAGGT GTATCAGGAG CGGGTGCTGG AGGTTGTGTT ACCGCCCGAC
AGCTTGTTAC TGACACGGCC TTGCTCATCG TTAGTAACGA ACAATCAGGT ATTGGGCGCG
AAGATGGGGT CATTTGATTG GCTGGATGCT AAACAGGCTA TGCAAGCCAG AACCTTGGGT
ATCCCTTACG TGGAGGGGCA TCAGCGGATC ATCACCTGTC TGACCAGGGT GTTTGAACGG
TACACCGCCG AATTTATCGG CGTACAGGAG ACTCGCTACC TGATGGATGC CATGGAAGGG
CGCTATGGTG AGTTAGTGAA AGAGCTACAA CGGCAGATAC CCGTCGGTAA AGTGGCTGAA
ATATTACAAC GGCTGGTTGA GGAAAATATT TCCATTCGCG ATTTACGGAC TATTTTCGGC
GCGTTGGTGG TTTGGGCACC GAAAGAAAAA GATATCGTGA TGCTCACCGA ATATGTCCGT
ATCGCCTTGC GCCGTCATTT GTGCCGTCGC TTTAGTCACA ATAAAACCTG GATATCAGTA
TTACGCCTCG GTGATGGGGT GGAGCATCTG ATCCGCGACT CTATCCGCCA GACATCATCA
GGCACTTACT CCGCACTGGA GGAGAGGCGA TCCCTCTTGA TCCTCAACAA AATAAAAAAC
GCATTTGCTG AAAACCAGGA TGCGGTATTG CTTACCACCC TCGATGTTCG TCGCTTTGTC
CGCAAAATTA TTGAGCGGGA TCTCTTCGTG CTACCGGTAC TTTCCTGGCA GGAACTGGGC
GATGAAATGA ATCTCAAGGT GGCGGGCACC ATTGAACTGA TTGGCGATGA ACTTGATGAA
ACTGCCTGA
|
|---|
| Protein sequence | MSKSALVRGL TMITARQDIF LAVMLLVAVF MMILPLPTTM VDLLIAINLA FSVILLMISI
YLRDPLEFSV FPSLLLITTL YRLALTISTT RLVLLQHDAG EIVEAFGQFV VGGNLAVGMI
IFTIITVVQF IVITKGSERV AEVSARFSLD GMPGKQMSID GDMRAGAIDS VEAKRLRERV
QKESRLFGAM DGAMKFVKGD AIAGIIVILV NIIGGITIGV MQHKMSAEEA MNTYAVLSIG
DGLCAQIPSL LISITAGIIV TRVPGSNKQS LANELAVQVG RQPDALWLAA AILTVFALLP
GFPFLIFITL AAAVAAPAFL LYRKNRRISQ DGRANGGGEE GAATGQRMTP GAVPLMLHCA
SNLHHPHLGR DIDGLRWRWF EHLGVPLPEV EIRCDPTLAE NTLSVQVYQE RVLEVVLPPD
SLLLTRPCSS LVTNNQVLGA KMGSFDWLDA KQAMQARTLG IPYVEGHQRI ITCLTRVFER
YTAEFIGVQE TRYLMDAMEG RYGELVKELQ RQIPVGKVAE ILQRLVEENI SIRDLRTIFG
ALVVWAPKEK DIVMLTEYVR IALRRHLCRR FSHNKTWISV LRLGDGVEHL IRDSIRQTSS
GTYSALEERR SLLILNKIKN AFAENQDAVL LTTLDVRRFV RKIIERDLFV LPVLSWQELG
DEMNLKVAGT IELIGDELDE TA
|
|---|
| |