| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3775 |
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| Symbol | |
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| ID | 5384632 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 4254954 |
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| End bp | 4258811 |
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| Gene Length | 3858 bp |
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| Protein Length | 1285 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640866799 |
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| Product | putative autotransporter protein |
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| Protein accession | YP_001402729 |
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| Protein GI | 153949827 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATATAC AATTCAGAGA GCCTATTTCT ACCTCACCCG CTCAACCGGA TGCAGGGCGT
CAACACCTCT TCAGCCGTGT TCCTGCAGCC GTGATGAATC CGATTACATT GGCAATTATT
GTTGCGTTCT CCCCCCTCGT CTTACCACAA ACCGCATGGG CGGCGTGCAA TAGCTCGGGG
GTGGGAACCT ATGTTTGCGA AGGTGAAAAT AACACCGCGA TATCCCTGTT CGGCACGGAT
ATCGCCGTTG AGACCCGGCC AGGTTTTGGC ATAACAGAAC ATGAAATTAC GGATTCTGCG
CTCTCGTTAA CCGGTTCGGG TACCATCAGT TACCTCGATA CCAACAGTTC TGCACTGGAT
ACCGACAGTC GATATTCTTT GTATATTAAG AATGACACAT TAATAACCGA GCAATCGGCA
TCCATTAATG TTCAGAGCAA CGGCTCCATT AGCAGTGGCG TTTACATTGA CAACCAGAGC
AGTGACGATT CGACCATACG GGTAGATCTC TCTGGCATCT TATCCAGCAG CCTGAGCGGC
GCTCCAGCCC TTTCAATCTT TTCATCGGCA GGCAATGATT CAACTATCAT TCTGAACACC
CACGCTATTT CAGGTGTTAC TGGCATCCAA AGCGATAATA ATTCACAAAA TGGAGCGACC
ATCACCCACG TTGATGTTAC TGGTGATATT AACGTCGAAA ATTCAGGCGT CTCGATCCGA
AATGCTGCCA ATGGTGGCAC CAGCATAATT AACTTCAATT CAAAGAGTAT TAATACAGAA
TATGACAGTT TTTATATTCA AAATACCAAT TATGTAGGTG GAGTGATAAC TGATATCAAT
ATTGATGGCG ATATCAGTTC AGCTAATAGT CAAGCAGCCA GGATTTACAA TTATACCAAT
GGCGGTCTTG CGAGCCTTAG ATTTCGCGCA AATAATGTCA CTGGATCGAC TGGCCTTTAT
ATCGATAATA GCAGCCAAAA TGGCGCTGTA ACCGATATTA TATTGACGGG TGATCTTACG
GCTACTTCAG GATCTGCTCT ACAAGCCAAT GCCTACTCGG ATGAGGGAAA CATCGAGACC
TCTATCAAGT TGAATAACGT TTATTCTTTG TATGATGCAC TCAATATTAG CGACTATACC
CGATCCGGAA ATATACTGCA TGACCTTGAT ATTTCAGGAA CGATTACTGC AGAAAACGGT
ACCGGAATTA AAGTGATGGG CGCGGCTGGT GAAGGCAGTT CTACTATGCT CATCAATGTG
AATAATATTA CTTCCAGCAG TCAATCGCTT GATATCAACA ATTACAATTT TTTGGGTTCA
GCTTTTTCTG CCATTACCGC GACCGGGCAT CTCACGGCGG AATGGGGACA AGGGGCAATG
CTCCAGACCC ATTCCTCTCT GGGGGATGCC ACCACGCTCA TCCACTTCAA TGACATCACT
GCAATGAGCA GTGGAATATC TCTCATTAAC GAAGCTAACC AAGGTACTTC AACCACCGAT
ATCACCGTGA CGGGCCAGAT TAACGTCAGC CACGGAGAGG GGATTACCCT TAATGCACTG
ACCACTGATG GCCGCACTTT GGTCAACGTT GACGTCAATA ATATTGCCAG TGAATACGAT
GCCATACGCC TCTATAACTA TAACTATAAC TATAACTATA ACTATAACTA TAACTATAAC
TATAACTATA ACTATAATGA TAACTACGCC ACAGGCGTGG ATGATGGCAC AGGCGCAGAC
AACGGCACCT CGACCATTGA TCTGATCACC CGGGGCGCGC TGGTTTCACA GCAGGGCTAC
GGGATTAATA TCGAAACCAA TACCGCAGAC ACCTATGTCA CCGTGGGCGG CTTGGTGCAC
GGCGGCAACG GTACCGCAAT TGGCATTCAT CGGCTCGAAA ATGTTCAAAA ATCAGCCACG
TTAGAGCTGC AATCTGGCTA TGCCCTTGAA GGCGTTACAC AGGCACTGGT CTTCACTGGC
AGTTATGCGG AGATCAATGA TGCCGCGTTG GATCTGGCAA ACAGCCATCT GGTGCTGGGG
GGAGCAGGGG ACGCTGCTTT CGATCTCACG CGTATTGATA ACCGTGAAGA GGCCATTCTG
GATGGCGACC CGAACCGGAT CACCGGCTTC GGTACCCTGA CCAAAACCAA CAACAGTATC
TGGACGTTAA CCGGCTCCAA TATGGCTGAC GGTGACGCCA ATGCCTTCCT GTCGGCCAAT
ATCGCCGGGG GGATTTTGGT GCTGGATAAC GCCACGCTGG GCCTGACACC TGACGCCGGG
GCACTGACTG GCCCCACAGT AAACCGCCTC AGTGCGGCCG ATATCGCCGC TGACCCGACG
TTGGTGGCTA CCGAAACCGG TGCATTAACC CTGGGTGAAG GCGGCGCGCT GTCCTCGCTC
GGTGATTCGG TTCTGAGCGG TAACCTCATC AGCGCTGGCG GGATCCTGCT GTCAAACCAC
TATACCGGCG GCAATGGTAC CGCTACCGAT GATCGGCTGA CCGTGACCGG GACTTATTTG
GGTGAAAATA ACGGTTCCGG TGAAGGGGCC TGGCTAACGC TGGATACGGT GCTGGGGGAT
GACGATTCTG CCACCGACCG GTTAGTGATC AACGGCGATG CCACCGGCAC CACCTCGGTC
CGGGTGAACA ATGCGGGCGG TCTGGGCGAT AAAACCCTCA ATGGCATCAA CCTGATCACC
GTGGACGGTC TGGCGCAGGA TGACACCTTC CTGCTGGCCG GGGATTATGT CACCACGGAT
GGCTATCAGG CGGTGGTGGG CGGGGCGTAT GCCTACACCT TACAGGCCGA CGGGGAAGCC
GCCACTGCGG GGCGCAACTG GTATCTCTCG TCAGAGCTGA TGTTAACCGA GGGGGTACGC
TATCAGGCGG GCGTGCCGCT GTATGAACAA TATCCGCAGG TGCTGGCCGC CCTGAATACC
CTGCCGACGC TGCAACAGCG TGTCGGTAAC CGTTACGGGG CACCGGGCGC ACTGGCAGAC
CTGAACTTTG ACGATAATCA ATGGGCCTGG GGCCGTATTG AAGGGAGCCA CCAGGTCACC
GACCCGGCCC GCTCCACCAG CGGTTCACAG CGTGAGATTG ATGTGTGGAA GTTGCAGACC
GGCATTGATG TGCCGTTGTA TCAGAGCCAG GGCGGTTCAC TGCTGACCGG CGGGGTGAAC
TTCACCTACG GAAAAGCCAA AGCGGATATC CACTCATTCT TTGGTGATGG CCGCATCAAC
AGCGCAGGTT ACGGTCTTGG CACCAGCCTG ACCTGGTATG GCAATAACGG CGTGTATGTG
GATGGCCAGT TGCAGACGAT GTGGTTTGAC AGCGACCTGA GCTCCCGTAC CGCAGGGCAT
GCGGTGGCCA GCGGTAACAA TGGTCGCGGG TATACCTCAG CGATAGAAGC CGGTAAAGGT
TACGCACTGG GTAACGGGTT ATCGCTGACT CCGCAGATGC AGGTGACCTA CTCGCGGGTC
GATTTCGATA CCTTCCGCGA TCCGTTTGAT AGCGAAGTCT CGCTGCAAGA GGGTGACAGC
CTGCGGGGCC GCCTCGGTGT CTCACTGGAT AAGGAAACGA CCTGGAGTGC GAAAGACGGC
ACCACCCGCC GCTCACACAT TTACAGTCAT CTCGATCTGC ACAATGAGTT CCTCAATGGC
AGCAAAGTAC AGGTCTCAGG GGTGGAGTTC GCCACCCGGG ATGAGCGTCA GTCGGTGGGG
TTAGGCGCGG GTGGCACCTA TGAATGGCAG AATGGTCGCT ACGCGGTTTA CGGCAATGTC
AATCTGCTGG GGGCTACACG GAATATCAGT GACAACTATG CCGTCGGCGG CACGATAGGT
GCACGAGTGA GCTGGTAA
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| Protein sequence | MHIQFREPIS TSPAQPDAGR QHLFSRVPAA VMNPITLAII VAFSPLVLPQ TAWAACNSSG
VGTYVCEGEN NTAISLFGTD IAVETRPGFG ITEHEITDSA LSLTGSGTIS YLDTNSSALD
TDSRYSLYIK NDTLITEQSA SINVQSNGSI SSGVYIDNQS SDDSTIRVDL SGILSSSLSG
APALSIFSSA GNDSTIILNT HAISGVTGIQ SDNNSQNGAT ITHVDVTGDI NVENSGVSIR
NAANGGTSII NFNSKSINTE YDSFYIQNTN YVGGVITDIN IDGDISSANS QAARIYNYTN
GGLASLRFRA NNVTGSTGLY IDNSSQNGAV TDIILTGDLT ATSGSALQAN AYSDEGNIET
SIKLNNVYSL YDALNISDYT RSGNILHDLD ISGTITAENG TGIKVMGAAG EGSSTMLINV
NNITSSSQSL DINNYNFLGS AFSAITATGH LTAEWGQGAM LQTHSSLGDA TTLIHFNDIT
AMSSGISLIN EANQGTSTTD ITVTGQINVS HGEGITLNAL TTDGRTLVNV DVNNIASEYD
AIRLYNYNYN YNYNYNYNYN YNYNYNDNYA TGVDDGTGAD NGTSTIDLIT RGALVSQQGY
GINIETNTAD TYVTVGGLVH GGNGTAIGIH RLENVQKSAT LELQSGYALE GVTQALVFTG
SYAEINDAAL DLANSHLVLG GAGDAAFDLT RIDNREEAIL DGDPNRITGF GTLTKTNNSI
WTLTGSNMAD GDANAFLSAN IAGGILVLDN ATLGLTPDAG ALTGPTVNRL SAADIAADPT
LVATETGALT LGEGGALSSL GDSVLSGNLI SAGGILLSNH YTGGNGTATD DRLTVTGTYL
GENNGSGEGA WLTLDTVLGD DDSATDRLVI NGDATGTTSV RVNNAGGLGD KTLNGINLIT
VDGLAQDDTF LLAGDYVTTD GYQAVVGGAY AYTLQADGEA ATAGRNWYLS SELMLTEGVR
YQAGVPLYEQ YPQVLAALNT LPTLQQRVGN RYGAPGALAD LNFDDNQWAW GRIEGSHQVT
DPARSTSGSQ REIDVWKLQT GIDVPLYQSQ GGSLLTGGVN FTYGKAKADI HSFFGDGRIN
SAGYGLGTSL TWYGNNGVYV DGQLQTMWFD SDLSSRTAGH AVASGNNGRG YTSAIEAGKG
YALGNGLSLT PQMQVTYSRV DFDTFRDPFD SEVSLQEGDS LRGRLGVSLD KETTWSAKDG
TTRRSHIYSH LDLHNEFLNG SKVQVSGVEF ATRDERQSVG LGAGGTYEWQ NGRYAVYGNV
NLLGATRNIS DNYAVGGTIG ARVSW
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