Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3753 |
Symbol | rhaR |
ID | 5386852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 4227804 |
End bp | 4228676 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640866777 |
Product | transcriptional activator RhaR |
Protein accession | YP_001402707 |
Protein GI | 153950236 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 0.890732 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGGGCAC CACTGCTGTT AGAAAGCCGG GATTATTTAC TCTCGGAACA GATGCCGGTG GCGGTAACCA ATCGATACCC GCAGGAAACC TTCGTAGAGC ATACCCATCA ATTTTGTGAA ATTGTGATTG TCTGGCGGGG AAATGGCTTA CATGTCCTGA ATGACCACCC TTATCGCATT ACCTGTGGGG ACGTTTTTTA TATTCAAGCC GCAGACCATC ATAGCTACGA ATCCGTACAT GATTTGGTAT TAGATAATAT TATCTATTGC CCAGAGCGAC TCCACCTGAA TGCGCAATGG CATAAGTTAC TGCCGCCTTT GGGACCTGAA CAGAATCAGG GCTATTGGCG GTTAACGACA CAAGGCATGG CGCAGGCACG GCCCATCATT CAACAGTTGG CGCAGGAATC GCGCAAGACG GATTCCTGGT CGATACAACT GACTGAAGTC CTGTTATTGC AACTTGCCAT TGTGCTGAAA CGCCATCGCT ATAGAGCTGA ACACGCTCAC TTACTGCCCG ATGGCGAGCA GCTTGATTTA ATCATGTCTG CGTTGCAGCA AAGTCTGGGA GCCTATTTTG ATATGGCTGA TTTCTGCCAT AAAAATCAGT TGGTTGAACG TTCTCTCAAG CAACTGTTCC GCCAGCAGAC CGGCATGAGT ATCAGCCACT ACCTACGCCA GATTCGCTTG TGTCATGCCA AGTGTTTATT ACGCGGCAGT GAGCATCGTA TCAGTGATAT CGCCGCTCGC TGTGGGTTTG AGGACAGTAA CTATTTCTCG GCTGTTTTTA CCCGTGAAGC CGGTATGACC CCACGAGATT ATCGCCAGCG CTTTATCCGC TCCCCGGTAT TACCCGCTAA AAATGAACCG TGA
|
Protein sequence | MRAPLLLESR DYLLSEQMPV AVTNRYPQET FVEHTHQFCE IVIVWRGNGL HVLNDHPYRI TCGDVFYIQA ADHHSYESVH DLVLDNIIYC PERLHLNAQW HKLLPPLGPE QNQGYWRLTT QGMAQARPII QQLAQESRKT DSWSIQLTEV LLLQLAIVLK RHRYRAEHAH LLPDGEQLDL IMSALQQSLG AYFDMADFCH KNQLVERSLK QLFRQQTGMS ISHYLRQIRL CHAKCLLRGS EHRISDIAAR CGFEDSNYFS AVFTREAGMT PRDYRQRFIR SPVLPAKNEP
|
| |