| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3646 |
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| Symbol | rnr |
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| ID | 5388476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 4108775 |
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| End bp | 4111309 |
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| Gene Length | 2535 bp |
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| Protein Length | 844 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640866666 |
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| Product | exoribonuclease R |
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| Protein accession | YP_001402600 |
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| Protein GI | 153947076 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACAAG ATCCATTCCT GGAACGAGAA GCAGAGAAAT ATGAGTCACC AATCCCTAGC
CGGGAATTTA TTTTGGCTCA TCTCGCGAAG CGCGAGACAC CTGCCAGCCG TGAAGAGCTG
GCCAATGAAC TTAATTTAAC CGGTGAAGAG CCTTTAGAGG CGCTACGCCG TCGTTTGCGT
GCGATGGAAC GTGATGGGCA ATTGGTCTTC ACCCGTCGTC AGTGCTACGC CTTGCCAGAG
CGTCTGGATT TACTGCGCGG TACGGTTATT GGTCACCGTG ATGGCTATGG CTTTTTGCGG
GTTGAAGGCA GTAAAGATGA TCTGTATCTC TCCGCAGAGC AGATGAAAAT GGCGATCCAT
GGTGATGTCG TCTTGGCACA AGTGGTCGGG GCTGATCGTA AAGGCCGCCG TGAAGCGCGT
ATCGTGCGTG TATTGGTCCC AAAAACCAGC CAGATCGTGG GTCGCTACTT TACCGATGCA
GGTACGGGCT TTGTCGTGCC GGATGACAGT CGTCTTAGCT TTGATATCTT GATCCCAGCA
GAGGCGACCT GTGGTGCGCG GATGGGCTTT GTGGTCGTAG TCGAATTGAC TCAGCGGCCA
ACTCGCCGTA CTAAAGCGGT TGGTAAGATT GTTGAAGTAC TTGGCGAGAA TATGGGCACC
AGCATGGCGG TGGATATCGC ATTGCGGACC CATGAGATCC CGCACACCTG GCCGCCTCAA
GTTGAAAAAC AAGTCGCAGA TCTGAAAGAA CAGGTACCGG AAGAAGCGAA AAAGGGGCGG
GTAGATTTGC GCGATCTGCC TCTGGTTACG ATTGATGGTG AAGATGCCCG CGACTTCGAT
GATGCCGTGT ATTGCGAGAA GAAACGTGGC GGCGGTTGGC GGTTGTGGGT AGCGATTGCG
GATGTCAGTT ATTATGTGCG TCCTCAAACC GCATTGGATG ACGAAGCCCG GAGCCGTGGT
AACTCGGTCT ACTTCCCATC GCAAGTGATA CCGATGCTGC CGGAAGTGCT ATCAAACGGC
CTTTGCTCCC TTAATCCACA GGTAGACCGC CTGTGTATGG TGTGCGAGAT GACCATCTCT
TCGCAGGGCA AACTCTCGTC TTATAAGTTC TACGAAGCGG TAATGAGCTC CCATGCTCGT
CTGACCTACA CTAAGGTGTG GCGGATTATA GATGGTGAGG AATCGCTGCG TGAGCAATAT
AAGCCGCTGG TGCCACATCT GGAAGAGCTG CACGCGATGT ATAAAGTGCT GGATCAGGCG
CGCGCAGAGC GGGGAGGGAT TGCTTTCGAA ACAGAAGAAG CCAAGTTTAT CTTTAATGCT
GAACGGCGCA TTGAACGTAT CGAACCCACG GTACGTAATG ATGCCCATAA GCTAATTGAA
GAGTGCATGA TTCTGGCGAA TATCGCGGCG GCGCGTTTTG TGGAAAAACA CGAAGAACCG
GCGTTGTTCC GAGTGCATGA CCGCCCAAGC GATGACCATA TTGTGGCATT GCGCAGTGTG
TTGAATGAGT TGGGGCTAAC ACTCGGGGGC GGGCTGAAGC CGCAACCAAA AGATTATTCA
GTGTTGATGG ATGAAATTTC TGATCGCCCC GATCATGAAA TGCTGCAAAC CATGTTGCTA
CGCTCCATGA AACAAGCGGT TTATGATCCA GAAAACCGGG GTCACTTTGG TTTGGCGCTG
GCTTCTTATG GCCACTTCAC CTCACCTATT CGTCGTTACC CTGATTTAGC GATGCATCGG
GCTATTAAGT ATCAGTTAGC CAAAGAGCAC GGTAATTTAA AAGATCGCTG GACACCTACG
GGCGGCTGGC ACAGCGATTT CGAAGATATG CTGCAATTGG GCCAACACTG TTCGATGACC
GAGCGCCGAG CGGATGAAGC AACCCGCGAT GTCGCTGACT GGTTGAAGTG TGACTTCATG
CTAGATCAGG TCGGTAATGT CTTCACCGGT ATTATTGCCA GTGTGACCGG TTTTGGCTTC
TTCGTGCGTC TGGATGACCT CTTTATCGAT GGTCTGGTGC ATGTCTCCAG CCTGGATAAC
GATTACTACC GTTACGACAA CATTGGTCAG CGTCTGATCG GTGAATCTTC CGGTGTAGTT
TATCGGCTGG GTGATACCGT GGAGATTCGA GTCGATGCGG TTCATATGGA TGAGCGTAAA
ATTGACTTTG CTCTGGTCTC CAGTACCCGC AAGCCACGTG GTGAAGGCAA GACCGCCCGT
GATAAGGCGA AAAATAACGG CCAGCGTACA TTACGCAGTA ATTCTGCAGG TCGTGGCTCT
TCATCCGGCT CATCGCGCCG TGATGGTGCG CCAACTGCGG GTGGACAAAA ACGCCCACGT
CGGGCGAAAA AACCGGTAAA CTTCGAGCCG GACAGTGCGT TCCGTCCAGA TGCTGCCGCG
GCTAAGCCAG ACGATAAAGC CTTAGCTGAG AAGAAAGCCA AGGCGAAGGC AAAAAGAGCC
TCGGCTAAGA CCAAAAAAAT TGCTGCGGCG ACCAAAGCCA AGCGAGCAAA GAAAAAAACC
ACTAGCGATC AGTAA
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| Protein sequence | MSQDPFLERE AEKYESPIPS REFILAHLAK RETPASREEL ANELNLTGEE PLEALRRRLR
AMERDGQLVF TRRQCYALPE RLDLLRGTVI GHRDGYGFLR VEGSKDDLYL SAEQMKMAIH
GDVVLAQVVG ADRKGRREAR IVRVLVPKTS QIVGRYFTDA GTGFVVPDDS RLSFDILIPA
EATCGARMGF VVVVELTQRP TRRTKAVGKI VEVLGENMGT SMAVDIALRT HEIPHTWPPQ
VEKQVADLKE QVPEEAKKGR VDLRDLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA
DVSYYVRPQT ALDDEARSRG NSVYFPSQVI PMLPEVLSNG LCSLNPQVDR LCMVCEMTIS
SQGKLSSYKF YEAVMSSHAR LTYTKVWRII DGEESLREQY KPLVPHLEEL HAMYKVLDQA
RAERGGIAFE TEEAKFIFNA ERRIERIEPT VRNDAHKLIE ECMILANIAA ARFVEKHEEP
ALFRVHDRPS DDHIVALRSV LNELGLTLGG GLKPQPKDYS VLMDEISDRP DHEMLQTMLL
RSMKQAVYDP ENRGHFGLAL ASYGHFTSPI RRYPDLAMHR AIKYQLAKEH GNLKDRWTPT
GGWHSDFEDM LQLGQHCSMT ERRADEATRD VADWLKCDFM LDQVGNVFTG IIASVTGFGF
FVRLDDLFID GLVHVSSLDN DYYRYDNIGQ RLIGESSGVV YRLGDTVEIR VDAVHMDERK
IDFALVSSTR KPRGEGKTAR DKAKNNGQRT LRSNSAGRGS SSGSSRRDGA PTAGGQKRPR
RAKKPVNFEP DSAFRPDAAA AKPDDKALAE KKAKAKAKRA SAKTKKIAAA TKAKRAKKKT
TSDQ
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