| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3522 |
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| Symbol | lsrC |
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| ID | 5387928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 3976403 |
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| End bp | 3977458 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640866537 |
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| Product | autoinducer AI-2 ABC transporter, permease protein LsrC |
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| Protein accession | YP_001402476 |
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| Protein GI | 153950553 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 59 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAAAT TTATTCAGAA TAATCGTGAA GGTACCGCGC TACTGGCCAT TCTCACCCTA
TTTGCCCTAT TGGGGATTAT TGACCGCAAC TATTTCAGCT TGCAGACCTT CACCATGATT
TTCAGCAGCG CACAGATCCT GATCCTGCTG GCCATCGGGG CCACCCTGGT GATGTTGACC
CGCAATATCG ACGTTTCCGT GGGCTCCATC ACCGGTTTAT GCGCGGTGAC CGTCGGTATG
GCGCTGAATG CCGGTTTTGG CCTGGCGGCA TCTTGCTTGT TCGCCTTGTT GGTCGGCATG
GTAGCGGGCT TTTTTAACGG CATTTTAGTG ACCTGGCTGC GCATTCCGGC CATTGTCGCC
ACGCTGGGTA CGCTTGGGTT ATACCGTGGC CTAATGCTAC TGCTAACAGG CGGTAAGTGG
ATCGAAGGAT TACCGGCGGA CCTGAAAAGT TTATCAACCC CCATTCTGTT TTCTATCTCG
CCCATTGGCT GGCTAGCGAT GTTGCTGATC CTTGCTATGG CCTGGCTGTT GGGCAACACC
GCCTTTGGCC GCAGTTTCTA TGCCACGGGG GATAACTTAC AAGGGGCGCG TCAGTTGGGG
GTCCGTACCG ACAGTATCCG CATTTTTGCC TTCTCAATGA ACGGCGTGAT GGCCGCACTG
GCTGGGATCG TCTTCGCTTC CCAAATTGGC TTTATCCCTA ACCAAACAGG CAACGGGCTG
GAAATGAAGG CCATTGCCGC CTGCGTGTTA GGCGGGATCA GCCTACTTGG TGGGACGGGG
ACCATTATTG GTGCCATTTT GGGCGCTTTC CTGCTGACAC AAATCGATAG CGTACTGGTG
TTACTGCGCC TACCGGCCTG GTGGAATGAC TTTATTACCG GTTTGGTGCT GCTGGGGGTG
TTGGTATTCG ATGGCCGTCT GCGTTGTGCT GTTGAGCGTA ATATCCGCCA ACAGAAATAT
GCCCGCTTCA CTGCCCGAGC CATTATTAGT GATAAAAAAA CAACCGTTAG CGATAACACT
CCAGCGGCTA GCAATAAAAA GAAGGCGGCA TTATGA
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| Protein sequence | MLKFIQNNRE GTALLAILTL FALLGIIDRN YFSLQTFTMI FSSAQILILL AIGATLVMLT
RNIDVSVGSI TGLCAVTVGM ALNAGFGLAA SCLFALLVGM VAGFFNGILV TWLRIPAIVA
TLGTLGLYRG LMLLLTGGKW IEGLPADLKS LSTPILFSIS PIGWLAMLLI LAMAWLLGNT
AFGRSFYATG DNLQGARQLG VRTDSIRIFA FSMNGVMAAL AGIVFASQIG FIPNQTGNGL
EMKAIAACVL GGISLLGGTG TIIGAILGAF LLTQIDSVLV LLRLPAWWND FITGLVLLGV
LVFDGRLRCA VERNIRQQKY ARFTARAIIS DKKTTVSDNT PAASNKKKAA L
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