| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3521 |
|---|
| Symbol | lsrA |
|---|
| ID | 5386987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 3974826 |
|---|
| End bp | 3976409 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640866536 |
|---|
| Product | autoinducer AI-2 ABC transporter, ATP binding protein |
|---|
| Protein accession | YP_001402475 |
|---|
| Protein GI | 153947106 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 56 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCATA CCGTTGCTAC ACCGCCGCCC CTGCTCCAAG TACGTGGTAT CAGTAAACAA
TTTTCCGGCG TAGTGGTCTT GAAAAGTATC GACTTTACTC TGCAACCCGG TCAGGTCCAT
GCCCTGTTGG GGGGAAATGG CGCGGGTAAA TCCACGTTGA TGAAGATCAT TGCCGGGATA
CTGCCCCCGG ATACTGGCGT GATTGAAATG AATGGGCAGC CCTGTTTCAA CCTCACCCCG
GCGAAAGCAC ATCAATTAGG TATTTATCTG GTACCACAGG AACCGATGCT CTTCGCCAAT
CTGTCGGTGC AGGAAAATAT TCTGTTCCGC TTACCCAAGC ATCAAGCCGA TAAAAAGAAG
ATGGCCCAAT TGCTGAAAAA CTTGGGTTGC CATTTGGATT TGTCGGTCAG TGCCGGTTCA
CTGGAGGTGG CCGATCAACA ATTGGTGGAG ATTATGCGCG GCCTGATGCG TGACTCGCGC
ATTTTGATCC TTGATGAACC CACGGCCTCG TTAACCCCTG CTGAAACCCA CCGTTTATTC
AGCCAAATCA GAATATTATT GCAGCAAGGC GTTGGGGTGG TGTTTATCTC CCACAAATTG
CCTGAAATAC GCCAACTGGC AGATTGGGTC AGTGTGATGC GCGATGGCGG TATTGCCTTG
AGTGGAGCAA CCGCCGATTT TTCTACAGAA GACATGATTC AGGCCATGAC CCCAGAGGCC
CAAAAAGGGG CATTAACCGA TAGCCAGAAA TTATGGTTGG AACTGCCCGG TAACCGCCGC
GCCCAATCAC GTGCTCAATC ACAACAACCG GTGATACACG TGCACGACTT GAGTGGCGAA
GGTTTCGCGC ATATTTCCTT TCATGTGCAA GCCGGTGAAA TCCTTGGGCT GGCGGGTGTC
GTTGGTGCGG GGAGAACAGA ACTGGCTGAA ACACTGTATG GCTTGCGGCC TGCCAGCACC
GGTAACGTGA TACTGGAAGA GGTCAATATC ACGGCGATGA AAACCGCCAA TCGCCTGGCG
GCGGGCTTAG TGTATTTGCC GGAGGATCGG CAAGCATCCG GCCTCTATCT TGATGCGCCA
TTAAGCTGGA ATGTCTGTGC GCTGGCCCAT GACCGACAAG GTTTATGGAC CCAACCAGCG
CAGGAGGCGG CCGTGTTGGA GCGTTACCGT CGGGCGCTGA ACATTAAATT CAGCCACCTC
GAACAACCGG TCCGTACCTT ATCTGGCGGT AACCAGCAAA AACTGCTGAT TGCCAAATGT
CTGGAAGCCA ATCCACTCCT ACTGATTATC GATGAACCGA CCCGTGGGGT GGATGTCTCT
GCCCGTAGCG ATATCTACCA ATTAATCCGT AGCATTGCCG AGCAGCAGGT CGCGATCATT
TTTATCTCTT CCGATCTGGA AGAGGTAGTA CAAATGGCCG ACCGGGTATT GGTGATGCAC
CAAGGGGAAA TCAATGGCGC ACTGAGCGGT GCGGCAATGA ATGTCGATAC CATCATGCAT
ATGGCGTTTG GTGAGCACCG TTCTGTGAGT GAACCTCAGG GCGGCACCGC CTCCTCGGCT
GAAAATAAGG GCGCATCATG CTGA
|
|---|
| Protein sequence | MPHTVATPPP LLQVRGISKQ FSGVVVLKSI DFTLQPGQVH ALLGGNGAGK STLMKIIAGI
LPPDTGVIEM NGQPCFNLTP AKAHQLGIYL VPQEPMLFAN LSVQENILFR LPKHQADKKK
MAQLLKNLGC HLDLSVSAGS LEVADQQLVE IMRGLMRDSR ILILDEPTAS LTPAETHRLF
SQIRILLQQG VGVVFISHKL PEIRQLADWV SVMRDGGIAL SGATADFSTE DMIQAMTPEA
QKGALTDSQK LWLELPGNRR AQSRAQSQQP VIHVHDLSGE GFAHISFHVQ AGEILGLAGV
VGAGRTELAE TLYGLRPAST GNVILEEVNI TAMKTANRLA AGLVYLPEDR QASGLYLDAP
LSWNVCALAH DRQGLWTQPA QEAAVLERYR RALNIKFSHL EQPVRTLSGG NQQKLLIAKC
LEANPLLLII DEPTRGVDVS ARSDIYQLIR SIAEQQVAII FISSDLEEVV QMADRVLVMH
QGEINGALSG AAMNVDTIMH MAFGEHRSVS EPQGGTASSA ENKGASC
|
|---|
| |