| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3511 |
|---|
| Symbol | pemA |
|---|
| ID | 5387791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 3961106 |
|---|
| End bp | 3962191 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640866527 |
|---|
| Product | pectinesterase A |
|---|
| Protein accession | YP_001402466 |
|---|
| Protein GI | 153950671 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4677] Pectin methylesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.12966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATTA ATGCTCTGAG TAAGACACTA TTATTAGGAT TGATATCATT TGCCGCTTTA
GGTGAAGTCA GCGCGGCACA GTACAATGCT GTGGTTTCTG CCATGGCGCA GGGCGATGAG
TTCTCTTCAA TTAATGCAGC GTTACAATCA GCACCGCCAG ATAGTTCTCC GTTTGTTATT
TTCCTTAAAA AAGGCGTTTA TACCGAACGG CTTGAGGTCA ATCGTGACAA TGTGACGCTG
AAAGGTGAGG AGCGTGATAC GACGGTGATT GGCGCGAATA CCGCCGCGGG TATGCTCAAC
CCACAAGGGA CGAAGTGGGG AACCTCTGGC AGCAGCACGG TATTGGTGAA TGCCGCCAAT
TTTACTGCAG AAAATTTGAC GATTCTTAAT GACTTCGATT TCCCTGCTAA TCAGGCGAAA
GCAGAGGGTG ATCCGACGAA ATTAAAAGAT ACGCAGGCGG TGGCGCTGTT ATTAGCAGAA
AAAAGTGATA AAGCCCGTTT CAGGCAAGTC AAACTTGAGG GGTACCAAGA TACGCTTTAT
AGCAAAACGG GCAGTCGTAG CTACTTTACC GATTGTGACA TCAGTGGCCA CGTCGATTTT
ATTTTTGGCT CAGGGGTGAC GGTATTTGAC CGCTGCAATA TTATTGCCCG TGATCGCCGT
GATATCTCCC CACCTTACGG TTACATTACG GCACCCAGTA CCCAAAATAC CGCACCTTAT
GGTCTGATTG TCCTCAATAG TCGTTTAACC AAAGAACCAG GTGTGCCTGC TAAAAGTTTT
GCCTTAGGGC GCCCGTGGCA CCCTACTACA GCATTTGATG ATGGCCGTTA TGCTGATCCT
GCGGCTATCG GACAGGCGGT ATTTATCAAT ACCGTAATGG ATGATCATAT TTATGGCTGG
GATAAAATGT CTGGAAAAGA TAAGCAAGGC GAGAAAGTTT GGTTCTATCC GCAAGACTCT
CGCTTCTTTG AAGCGAACAA TCAGGGACCA GGGGCTGAAA TTAATGAGGG GCGGCGTCAG
TTGTCTGCTG AGCAACTAAA AGCGTTCACA TTGCCAATGA TTTTTCCCGA CTGGACCGTT
CAGTAG
|
|---|
| Protein sequence | MPINALSKTL LLGLISFAAL GEVSAAQYNA VVSAMAQGDE FSSINAALQS APPDSSPFVI
FLKKGVYTER LEVNRDNVTL KGEERDTTVI GANTAAGMLN PQGTKWGTSG SSTVLVNAAN
FTAENLTILN DFDFPANQAK AEGDPTKLKD TQAVALLLAE KSDKARFRQV KLEGYQDTLY
SKTGSRSYFT DCDISGHVDF IFGSGVTVFD RCNIIARDRR DISPPYGYIT APSTQNTAPY
GLIVLNSRLT KEPGVPAKSF ALGRPWHPTT AFDDGRYADP AAIGQAVFIN TVMDDHIYGW
DKMSGKDKQG EKVWFYPQDS RFFEANNQGP GAEINEGRRQ LSAEQLKAFT LPMIFPDWTV
Q
|
|---|
| |