Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3498 |
Symbol | deoC1 |
ID | 5385981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 3947486 |
End bp | 3948283 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640866511 |
Product | deoxyribose-phosphate aldolase |
Protein accession | YP_001402453 |
Protein GI | 153950774 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0274] Deoxyribose-phosphate aldolase |
TIGRFAM ID | [TIGR00126] deoxyribose-phosphate aldolase |
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Plasmid Coverage information |
Num covering plasmid clones | 58 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGATT TAACCGCCTG CGCGCATTTG AACGATTATG CTAAACGCGC GCTAAGTTTG ATGGATTTAA CCACCCTGAA TGACGACGAT ACCGATGAAA AAGTGATCGC GCTCTGTCAT CAGGCTAAAA GCCCGGCCGG TAATACCGCG GCAATTTGTA TTTATCCTCG CTTTATCCCG GTTGCCCGTA AGGCGTTACG TGAACAGGGC ACTCCTGAGA TCCGTATCGC AACGGTGACC AACTTCCCTC ATGGCAATGA TGATGTTGCG ATTGCGTTGG CTGAAACCCG TGCTGCCATT GCTTATGGTG CCGATGAAGT GGATGTGGTT TTCCCTTATC GCGCGTTAAT GGCCGGTAAC GATAAAATTG GCTTCGAACT CGTGAAAACG TGTAAAGAAG CCTGCGCTGC GGCGAATGTA TTACTGAAAG TCATCATTGA AACTGGCGAA CTTAAGCAAG CGCATTTAAT TCGTCAGGCC TCTGAAATTG CAATCAAAGC GGGTGCCGAT TTTATTAAAA CCTCTACCGG TAAAGTGCCG GTGAATGCCA CGTTGGAAAG TGCAGACATT ATGATCCGCA CTATCCGTGA GTTAGGCGTA GGCGAAACGG TGGGCTTCAA ACCGGCTGGT GGTGTCCGTA CCGCAGAAGA TGCCGCGCAA TTTTTGCAAT TGGCTGATCA ACTGATGGGG GAAGGCTGGG CTGATGCACG CCATTTCCGC TTTGGCGCTT CCAGTCTACT CGCCAGTTTG CTGACCACAT TGGGTCACCA GAGTAACGCC AACAGCAGCG GCTACTAA
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Protein sequence | MTDLTACAHL NDYAKRALSL MDLTTLNDDD TDEKVIALCH QAKSPAGNTA AICIYPRFIP VARKALREQG TPEIRIATVT NFPHGNDDVA IALAETRAAI AYGADEVDVV FPYRALMAGN DKIGFELVKT CKEACAAANV LLKVIIETGE LKQAHLIRQA SEIAIKAGAD FIKTSTGKVP VNATLESADI MIRTIRELGV GETVGFKPAG GVRTAEDAAQ FLQLADQLMG EGWADARHFR FGASSLLASL LTTLGHQSNA NSSGY
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