Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3488 |
Symbol | |
ID | 5388408 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 3935113 |
End bp | 3935619 |
Gene Length | 507 bp |
Protein Length | 168 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640866501 |
Product | ompA family protein |
Protein accession | YP_001402443 |
Protein GI | 153949584 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 46 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGAAAA TGCAAAACAA GCGTTTAATA CAACGTATTT GGGTCAGTTT CCTGGCAATG GGTTTGATGC TATTAGTGGG GTGTCAGGCT AAACCACAAG GGCTAACACC TGATCAAATC GCCGCATTGC AAGAGCAGGG GTTTAAATTA ACCGATAATG GCTGGGAATT TGGCCTGGCA AATAAAGTGC TATTCGACAG TGATGTGAAA AAATTAAATT CTGAGGGTAT GCAAACCGTA CAAAAGATTG GCCGGATATT GTCAGATGTG GGGATTAAGC ATATGCGGGT TGATGGTCAT ACCGACTCCG TCGGGAAGGA TGACTATAAT CAACAATTAT CCTACCAGCG CGCCTTAGCC GTAGCCGATA CTCTCGCTAC CGTCGGTATT CCAAAGAGTA ATATTGATGT TCGTGGCCGT GGCAAGTTAG AGCCCGTCGC GGATAACCGC ACCAGTAAAG GCCGAGCCGA AAACCGCCGC GTCGCCATTA TTATCACCGC GTCCTAA
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Protein sequence | MQKMQNKRLI QRIWVSFLAM GLMLLVGCQA KPQGLTPDQI AALQEQGFKL TDNGWEFGLA NKVLFDSDVK KLNSEGMQTV QKIGRILSDV GIKHMRVDGH TDSVGKDDYN QQLSYQRALA VADTLATVGI PKSNIDVRGR GKLEPVADNR TSKGRAENRR VAIIITAS
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