| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3485 |
|---|
| Symbol | |
|---|
| ID | 5388259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 3930094 |
|---|
| End bp | 3932820 |
|---|
| Gene Length | 2727 bp |
|---|
| Protein Length | 908 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640866498 |
|---|
| Product | cation transporter HAD ATPase |
|---|
| Protein accession | YP_001402440 |
|---|
| Protein GI | 153949527 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0474] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01517] plasma-membrane calcium-translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAACT CATCAAACCC TAAAAGTGCC TCCCCCCCTC CAGAGGGTAA GGCTTGGTAT
CAACTTACTG TGGAAGAATC TTTGCAGCAT CTAAATAGCC GCGAAGAAGG ATTAAGCCAA
AAAGAGGCAC AAGAGCGCCT GGCGCAATAT GGTCCCAATG CACTACCTGC CAGAAAAACA
AAACACCCTC TACTGCAATT CCTGGCACAT TTTAACGATG TCCTGATTTA TATTCTGTTG
GCCGCAGCGT TAGTAAAAGG TTTGATGGGG CACTCAGTTG ATACCATTAT TATCCTTTGT
GTCGCGGTGA TTAACGCGCT AATTGGCTTT ATTCAGGAAA ATAAAGCTGA AAAATCATTG
AAAAGCATCC AAAACATGCT TTCCAGCAAA GCCGTGGTTA TTCGGGATGG CAAGGCACAA
ACTATTGATG CGCAGAATCT GGTGCCAGGA GATATCGTCA CCTTGCGCCC AGGGGATAAG
ATCCCCGCAG ACCTGCGTTT ACTGGAAGCC CATAATCTCC AGATTGAAGA AGCTATTCTG
ACCGGTGAGT CTACCGTGGT TGAAAAGCAG ATCGGCGTCA TTGAGAACGA ATCCGTCATC
GGTGATCGCA AGAACCTCCT CTTCTCGGGC ACCACCATCA GTGCCGGTAC GGCCAAAGGC
GTCGTCATCG CGAGCGGTGG AGATACCGAG CTGGGTCATA TCAATCAGAT GATGGCGACC
GTGGAGTCGA CCCGCACCCC TCTGTTACAA CAGATGGATC GTCTGGGAAA AGCCATTTTC
ATCCTGATTT TGGTGATGAT GGCGATATTG TTCGTTTTCG CCTTTATCTT ACGTGACCTA
CCAGTCGATG AGTTGCTACT GGCCTTAATC AGCTTGGCTG TCGCCTCGGT ACCGGAAGGT
TTACCGGCGA TCATTTCGAT TATTCTGTCT CTGGGTGTGC AAGCGATGGC GCGCAACCGC
GCGATTATCC GCAAGTTGCC AACGGTAGAA ACCTTGGGTG CCATGACCGT CGTCTGCTCC
GATAAAACCG GTACGCTGAC GATGAACGAA ATGACGGTTA AAGCCGTGAT TCTGGCGGAT
CATTGCTACC GCGTGGAAGG TGAAAGCTAT GAACCGGTAG GTAATATCTA TCCAGAAGGT
CGCGAGCAGC AAGCGGAGTT GGACACCAAT AAGGCGCTGA AAACATTTAT TACTGCGGTC
AATCTATGTA ATGACAGCCA GATTCAGCAA AACGAACAAG GCCATTGGAC CATTACTGGT
GGGCCAACCG AAGGGGCGTT GAAAGTACTG GCGGCAAAAT CCGGGATCAA GCTGGACCAC
GTTACCCAAC ACGGCAAAAT TCCTTTCGAT TCTGCCTATA AATACATGGC TACCAGCCAT
CAGGTTCAGT CAGATAACAG TATCTTCCTA ACCGGTGCGC CTGATGTCTT GTTCACCTTC
TGCCAACAAG AACTGACCGA CAGCGGTGTT GCGCCGTTCC GCCGTGATTA TTGGGAAGCG
GAAATGGCGC GCTATGCCAA ACAAGGCTTG CGTATGGTGG CAGCGGCCTT CCGCCCAACG
GATCAACCGG TCAACGAACT CGATCACAAA GATATTCAAC AAGGCATGGT GTTTGTTGGT
ATCGCCGGCA TGATGGACCC ACCACGCCCT GAAGCTATCG ATGCGATTGC TACCTGCCAA
CAGGCCGGTA TTCGGGTGAA AATGATCACT GGCGACCATC AGGAAACGGC GATGGCGATC
GGGGCCATGT TAGGGATTGG CAACGGTACA GATTCCATAA CAGGTAGCCA ACTGGAACAT
ATGGATGACC AACAACTGGC AGAAGCCGCT GTTCGTTATG ATATTTTTGC CCGCACCAGC
CCGGAACACA AACTGCGTCT GGTAAAAGCC TTGCAGGAGA AGGGTGAAAT CGTGGGTATG
ACCGGCGATG GGGTTAACGA TGCTCCGGCG CTGAAACAGG CCGATGTCGG CATTGCTATG
GGTATCAAAG GCACCGAGGT GACGAAAGAA GCCGCCGACA TGGTGTTATC CGATGATAAC
TTCGCCACCA TTGCCAGTGC CGTTGAAGAA GGCCGCCGGG TTTACGATAA CCTGAAAAAA
ACCATTCTGT TTGTTTTGCC AACTAACCTG GCGCAAGGTT TATTAATCAT CTTTGCTATC
CTTGCGGGTG CGGTGATCCC ATTAACACCA CTACAAATCC TGTGGATGAA CATGGCAACC
TCCACCACCC TCTCCTTTGG TCTGGCATTT GAACCCGCGG AAAAAGGCAT TATGCGCCGT
AAGCCACGTG ACCCATCCCG CCATGTATTG GATGGTCATG CCATTTGGCG GATTGGTTTT
GTCGGGACCT TGATTGCTTG TAGTGCTTTC GCCCTGGAAG CCTATTTAGA ACCCCGTGGT
TACAGTACCG AATTTATCCG TACCGTTCTC ATGCAAACAC TAGTGACCGC TCAGTGGATC
TACATGTTTA ACTGCCGTGT GATGGATCGT TTCCCACTGA ATAAAGAAGT ATTCGTTAAC
AAAGGTCTGT GGTTAGTCTC TGGCGTACTG GTGCTGTTGC AGCTAGCTAT CATCTACCTG
CCATTTATGA ATACTGCCTT TGGTACCGCG CCATTACCCG CCTATTACTG GGGGATAACC
TTACTGGTTG CTATTGCCAT CTTTATTATT GTTGAAATAG AAAAATGGGT TATCGGGCGC
TTTAAAGGCA TGAATAACCC CGTTTAA
|
|---|
| Protein sequence | MQNSSNPKSA SPPPEGKAWY QLTVEESLQH LNSREEGLSQ KEAQERLAQY GPNALPARKT
KHPLLQFLAH FNDVLIYILL AAALVKGLMG HSVDTIIILC VAVINALIGF IQENKAEKSL
KSIQNMLSSK AVVIRDGKAQ TIDAQNLVPG DIVTLRPGDK IPADLRLLEA HNLQIEEAIL
TGESTVVEKQ IGVIENESVI GDRKNLLFSG TTISAGTAKG VVIASGGDTE LGHINQMMAT
VESTRTPLLQ QMDRLGKAIF ILILVMMAIL FVFAFILRDL PVDELLLALI SLAVASVPEG
LPAIISIILS LGVQAMARNR AIIRKLPTVE TLGAMTVVCS DKTGTLTMNE MTVKAVILAD
HCYRVEGESY EPVGNIYPEG REQQAELDTN KALKTFITAV NLCNDSQIQQ NEQGHWTITG
GPTEGALKVL AAKSGIKLDH VTQHGKIPFD SAYKYMATSH QVQSDNSIFL TGAPDVLFTF
CQQELTDSGV APFRRDYWEA EMARYAKQGL RMVAAAFRPT DQPVNELDHK DIQQGMVFVG
IAGMMDPPRP EAIDAIATCQ QAGIRVKMIT GDHQETAMAI GAMLGIGNGT DSITGSQLEH
MDDQQLAEAA VRYDIFARTS PEHKLRLVKA LQEKGEIVGM TGDGVNDAPA LKQADVGIAM
GIKGTEVTKE AADMVLSDDN FATIASAVEE GRRVYDNLKK TILFVLPTNL AQGLLIIFAI
LAGAVIPLTP LQILWMNMAT STTLSFGLAF EPAEKGIMRR KPRDPSRHVL DGHAIWRIGF
VGTLIACSAF ALEAYLEPRG YSTEFIRTVL MQTLVTAQWI YMFNCRVMDR FPLNKEVFVN
KGLWLVSGVL VLLQLAIIYL PFMNTAFGTA PLPAYYWGIT LLVAIAIFII VEIEKWVIGR
FKGMNNPV
|
|---|
| |