Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3463 |
Symbol | nhaR |
ID | 5384378 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 3902569 |
End bp | 3903468 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640866476 |
Product | transcriptional activator NhaR |
Protein accession | YP_001402418 |
Protein GI | 153948606 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000000000000146578 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAATGT CACATATTAA TTTCAATCAT CTTTATTATT TTTGGCAGGT TTGTAAAGAA GGCTCGGTTG TGGGAGCCGC AGAGGCACTG TTTCTGACTC CGCAAACAAT CACCGGCCAA ATTAAAGCGC TGGAAGGGCG CTTAGGCGGT AAGCTATTTA AGCGGCGGGG GCGGGGATTG GTCCCTTCAG AATTGGGGCA ACTGGTTTTC CGCTACGCGG ATAAAATGTT TATGCTTAGC CAGGAAATGC TGGATATCGT TAACTACCGT AAAGAATCCC ACCTGTTATT CGATGTCGGC GTCGCCGATG CATTATCGAA GCGTTTAGTG AGTCAGGTTC TGGAAACTGC GGTGGTTGAG CATGAAAAAA TTCATCTACG CTGTTTTGAA TCCACCCATG AGATGTTGTT AGAACAACTC AGTCAGCACA AATTGGATAT GATCTTGTCT GATTGCCCGG TTGACTCCAG TCAGCAAGAG GGGTTGTTCT CAGTAAAATT GGGGGAATGC AGTGTCAGTT TCTATTGTCG CCAGCCTGTC CCCGATCTAC CTTTCCCTGC CAGTTTGCAG CAAAAGCGTT TATTGATCCC CGGTCGCCGC TCAATGTTAG GGCGAAAATT ACTCAACTGG ATTAACAGTA AAGGCCTGAA GGTAGAGGTT TTGGGGGAAT TTGACGATGC TGCCCTGATG AATGCGTTTG CTGTCTATCA TGACGCTATC TTTGTCGCAC CAACGATATA CGCCGCTGAT ACTTATGCTA ACGATAGTGA AATTATTGAA ATTGGTCGTT TAGATAACGT ACAGGAAGAG TACTACGTTA TTTTTGCTGA GCGGATGATC CAACATCCGG CAGTACAGCG GGTATGTAAC AAAGATTTTT CAGCGTTGTT TAACTGTTAA
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Protein sequence | MRMSHINFNH LYYFWQVCKE GSVVGAAEAL FLTPQTITGQ IKALEGRLGG KLFKRRGRGL VPSELGQLVF RYADKMFMLS QEMLDIVNYR KESHLLFDVG VADALSKRLV SQVLETAVVE HEKIHLRCFE STHEMLLEQL SQHKLDMILS DCPVDSSQQE GLFSVKLGEC SVSFYCRQPV PDLPFPASLQ QKRLLIPGRR SMLGRKLLNW INSKGLKVEV LGEFDDAALM NAFAVYHDAI FVAPTIYAAD TYANDSEIIE IGRLDNVQEE YYVIFAERMI QHPAVQRVCN KDFSALFNC
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