| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3434 |
|---|
| Symbol | |
|---|
| ID | 5386923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 3870472 |
|---|
| End bp | 3870990 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640866447 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001402389 |
|---|
| Protein GI | 153948599 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
|---|
| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 0.471833 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCTT TAGTCGATTA CTTTCTCCAT ATCGAAGGTG TAGATGGTGA GTCTCCCGAT
CAGCAGTATA ACGGATGGAT CCAAGTACAG GCTTGGCAAT GGGCGGAGGA GAATGCGGGG
CGCTGGGGGC TAGGTGGCGG TGGTGGTTCT GGGAAAGTCG AAATGAAGGA CTTCGAATTT
CGCATGGTGA GTAACAAAGC ATCACCAAAA CTATTTTTGA TGTGTGCCAT CGGTGAACAC
ATTCCGCAGG CCAAGTTGGT GTGTCGTAAA TCAGGTCAAG GTCAACAAGA CTTCCTGATT
GTTACCTTCA GTAACTGTCT GGTGTCCTCC TTTAAAACTG TCGGCAACAT GCCTCTTGGT
AAAGGGGACG CAGTATTCAC CGACACGGTG CTGCCAACGG ATGCCATCAG CCTTAACTTT
GCACGTATCG AAGTGGAATA CAAAGAGCAG CAACCTGATG GCTCGATGGG GGCCGTGATT
AAGGCTGGTT ACGATCTGAA ATTGAACAGC CGTATTTAA
|
|---|
| Protein sequence | MAALVDYFLH IEGVDGESPD QQYNGWIQVQ AWQWAEENAG RWGLGGGGGS GKVEMKDFEF
RMVSNKASPK LFLMCAIGEH IPQAKLVCRK SGQGQQDFLI VTFSNCLVSS FKTVGNMPLG
KGDAVFTDTV LPTDAISLNF ARIEVEYKEQ QPDGSMGAVI KAGYDLKLNS RI
|
|---|
| |