| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3421 |
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| Symbol | |
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| ID | 5387041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 3850633 |
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| End bp | 3854127 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640866434 |
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| Product | hypothetical protein |
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| Protein accession | YP_001402376 |
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| Protein GI | 153949294 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 48 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATACGCA GAATGTTGAT TTTAATCATT GCCCTAGTGC TTTGTTATAT TGTGTGGTGG
ATAGGGCCGC TGATCGCCAT TGGCCCCTAT TTCCCTCTGG GGGGGGTATG GGTTCGTAAG
ATCATTATTG CTCTGATTTT ATTTTGGGCA CTGTGGCCAT TTGTTGCAAT TTTCTTCAGT
TGGATTTTTC GTTATGCCCG TGCGCCACTT CCCAAGCGCA AGAAAAAAAC GGTTCAGCTT
GATCGCGTTT CTGCACGTTT TCATGATGCG ATGCTCACCC TGCAACATGC GGATCTTTCA
AGCCAGAAAA CACGCTGGCA GCGCTGGCGT CAACGGCGTA AGCGCCAGTA TATCGATGCT
AAACCGTGGT TTCTGGTCAT GGGGCCACCC GGATGCGGTA AAACGTCGAT AGTTTATGAG
AGTAGCGAGA AGTTCCTACT CTCAGAACAG TATGGTTTAG CGCAGACCAC GGATATTGGA
CCGACGCAGG ACTGTAATTG GTGGCTGACG GATCGTGCTG TTTACATCGA TACGGCAGGG
GAATGGATCC TGCTGCATGG TCAGAGCGAA GAAGCGGGCA CGGCTCGGCA AAAATTGTTC
TCTATGATCC GCAAATATCG CCGTTATCCG GGGGTTGATG GGATTGTTCT TTGCCTTGAC
GTCAGCGTGC TTTTGAACTC TTCGGTGACG GAACGTAAGT CACTGGCTGA TACGTTGCGT
CTGCGGATCC TGGAAGTTGC CTCGACATTT CAGGCCGATA TTGCGGTGTA CTTGTTCCTC
AACAATATCG ATAAGTTACC TGGCGGCGAA ACCTTCCTCT CGCTAATGAA CGACGAACTT
CTGGCCGGAG GGCTTGGGAT TAGCATGACC CATAATGAAA AGGGTCAGAA CAATTTCGTT
GCCGATGAAG AACGTTACCG TGAACTCCTG ACACGTGTTA GCCGTTATGT GTTGGAAATA
CTGCACGATT CGCCCAATAT GGAGATGCGC CACCAATTGC TGCTGTTTAC AGAAAGCCTG
GGAGCGCTAC AAAAACCCCT GTTTGGCTTA TTCGAACAAA TATTTCCGGC GACACCGATT
GGCTATACCG GTTGTTTGCG GCAGTTCTGG TTTGGCAGTA CCCAAAATCT GACCTCATGG
GAGGCGCTGT ATTATCCATC ATCGACCAGC ACCTTTGAAA GCCGGCCTGC TGGGCAGATG
TATTTCCCTG CACTGAGTCA AGCGATCACC GAAAGGGGGG TATTACACGC CACCGGCCCC
ATGCCTTTGC GAAATCGCCT GTTAAACATC GGTAAGTATG TGTTCGTGGT CCTTGTGCTC
TGCATCTTAT TGTTGATGCT GAGCGCCCGC TATTTTTGGG AATATGACTA TATTGGCTAT
GCGACAGCTC GGTTTGAGGA AACCCGTCGG ATTGTGCGTG ACATCCCAAT CACGAATCAG
GTCAACGATA ATCTGGTCGC AGCTTACGAA CAGTTGGGGT ATATCAACAC CCATTATCTG
GAAAGTTCTC CGCCCCTGCT GACACCGTAC TTCGAGCACC GTTTACTGAA TCAGGCGATG
TTGCAAACCT ACCATCGTCA CCTGAATAAA GTGTTCTGGC CTGCGGTACA AAACTACGTC
ACCAACGAGC TGAAAAAGGA CACTCAATCT CCTGACGGTG ACAACTATGA CACGCTGAAA
GTTTACCTGA TGCTCGGACA ACCTGATCAC CGCTCTCAGG AGGCATTGGT GCAATGGTTT
ATGTCGCGCT GGGAAAGTTT TGCGCCTCAG GGATATGGGC AAAACGACCG CAAACTCTTC
AGTTATCATT TGAGTGAACT GTTTTCTGAC ACCGCCTCAG CTGCCCCGAA AGTTAAGCTG
AATGATGAGC TGATCCGTGA ATCACGCATT AAAGCGATGA AAACACCGAT ACACATCCGG
GTGATTAATC GTATTCATGA CGCCCCACTG CCCGCGAGGA TTGAGGATCT TAGTCTGGCG
GATGCCGCCG GTCCTAGCGT AACACTGATG CTGAGACGTA AAAGCCCCAG TACAGTAACG
GATTTGGCGA TCCCGGCTTT CTACACTCGG GCCAGCTACC ACGATGTGGT TAACCCACAA
CTTCAGGAAG CATCGGAAGC GATGATTAAC GAGGAAGCGT GGGTGTTGAG TGACGGTAAA
GCTTCGGTTA GTCAGGTTAG TTTACTGGCT GCGGCGCAAA AACTGTCCGA TGAAGCGCGC
AAGTATTATC TGATGGAGTA TGCCAACCAA TGGGATGCAT TCTTCAATGA TATCAGGGTG
CGCCCAATCA ACGGACTTGA TGATGCGGCG CTGCTGGCAA GGCAACTCTC AGACCCGTCA
TCCCCGTTGG CTAATCTGGT GCGTTTCTCC ACACGGGAAA TAACCCTAAC CACTGATAAT
AATGGTAAAG GGGCGATGTC ATCAGGTTGG TTCAGTATTC AGCGTAATAA ACTCACGACT
GCCCGTCGTA GCATCATTGA CGAAATGTCG GGTGAGCGTT CTCGTTTTCG TCTGACGCCA
GAGAAAGCGG TGGAGGATCG CTTTGAACTG CTAAGACGTC TGGGATATGC CCTGCAAAGT
GCGTCTACCA GCAATTCTGA TCCGTTGGGC CGAACCTTCG AGCAGATTTA TAACCAGTTG
ATAACACTCT CGACCTCCCT TCGGGCTGGG CAGATTTTGC CGCAAAATAA CGATTTCAGT
CGCTTGCAAA TCGATATGGC CCGTCAGCCA GAGCCGGTGC GCAGCATTAT GATGGATCTG
CTGGCCGTCG GACAAACGCA AAGTCTGCAA CAAAGTAAGG CCAACCTCAG CAAGGGCGTC
TCTTCAATTG CTTCTGATTT ATGTAGCAAC GCCGTCAGTG GCCGTTATCC CTTTAATCGG
TTGGCTAGCG AAGAGATAGG TATTGGCGAT TTCAACCGTA TGTTTGGTCG TTCTGGGGCG
ATGCAAAGCT TCTTTGATCA GAATCTCGCA CCGTATGTCG ATACCAACGG CAACCGCTGG
AAGGTAAAAC CTGACAGTAA CGGTGTGGTG ACCCCTAAAA CTCTGCGTTC GTTTGAAAAC
TCAGCACAAA TCCGCGACAC CTTCTTTGAT GCCTCCGGCA AGATGGCGAT GTCGATGATC
ATTCGCCCTA TCTCACTGAC TCCATCAATT TTGGAAGCGG TTCTTGATGT CGATGGCCAG
ATTATTAACT ACAGCCATGG TTCTAACCAA CCGGTAAAAG TTGATTGGCC AGGACCGAAA
GGTGGGGTGT ATATCCGCCT GACGTTCAAA ACTCAGGATG GAAATGTGGA AACCGTTAGC
TTCAATGGTC CGTGGGCTAT TTTCCGCATG TATGACGTTA GTAACCCTAG GCCACTCGGG
GTCAATAGCC GTGAACTCAT GATGGTGATG GATAACGTGA GTGGCGTCTT CAAAATTGAG
TTGAGTTCCA CCATGAAAGA TTATCCGCTG TGGTCAAAAG CATTGGCACA GTTCTCATGT
CCTAAGAATC TCTAA
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| Protein sequence | MIRRMLILII ALVLCYIVWW IGPLIAIGPY FPLGGVWVRK IIIALILFWA LWPFVAIFFS
WIFRYARAPL PKRKKKTVQL DRVSARFHDA MLTLQHADLS SQKTRWQRWR QRRKRQYIDA
KPWFLVMGPP GCGKTSIVYE SSEKFLLSEQ YGLAQTTDIG PTQDCNWWLT DRAVYIDTAG
EWILLHGQSE EAGTARQKLF SMIRKYRRYP GVDGIVLCLD VSVLLNSSVT ERKSLADTLR
LRILEVASTF QADIAVYLFL NNIDKLPGGE TFLSLMNDEL LAGGLGISMT HNEKGQNNFV
ADEERYRELL TRVSRYVLEI LHDSPNMEMR HQLLLFTESL GALQKPLFGL FEQIFPATPI
GYTGCLRQFW FGSTQNLTSW EALYYPSSTS TFESRPAGQM YFPALSQAIT ERGVLHATGP
MPLRNRLLNI GKYVFVVLVL CILLLMLSAR YFWEYDYIGY ATARFEETRR IVRDIPITNQ
VNDNLVAAYE QLGYINTHYL ESSPPLLTPY FEHRLLNQAM LQTYHRHLNK VFWPAVQNYV
TNELKKDTQS PDGDNYDTLK VYLMLGQPDH RSQEALVQWF MSRWESFAPQ GYGQNDRKLF
SYHLSELFSD TASAAPKVKL NDELIRESRI KAMKTPIHIR VINRIHDAPL PARIEDLSLA
DAAGPSVTLM LRRKSPSTVT DLAIPAFYTR ASYHDVVNPQ LQEASEAMIN EEAWVLSDGK
ASVSQVSLLA AAQKLSDEAR KYYLMEYANQ WDAFFNDIRV RPINGLDDAA LLARQLSDPS
SPLANLVRFS TREITLTTDN NGKGAMSSGW FSIQRNKLTT ARRSIIDEMS GERSRFRLTP
EKAVEDRFEL LRRLGYALQS ASTSNSDPLG RTFEQIYNQL ITLSTSLRAG QILPQNNDFS
RLQIDMARQP EPVRSIMMDL LAVGQTQSLQ QSKANLSKGV SSIASDLCSN AVSGRYPFNR
LASEEIGIGD FNRMFGRSGA MQSFFDQNLA PYVDTNGNRW KVKPDSNGVV TPKTLRSFEN
SAQIRDTFFD ASGKMAMSMI IRPISLTPSI LEAVLDVDGQ IINYSHGSNQ PVKVDWPGPK
GGVYIRLTFK TQDGNVETVS FNGPWAIFRM YDVSNPRPLG VNSRELMMVM DNVSGVFKIE
LSSTMKDYPL WSKALAQFSC PKNL
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