Gene YpsIP31758_3336 details

Gene Information

• Locus tag: YpsIP31758_3336
• Symbol: ligT
• ID: 5387999
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 3753933
• End bp: 3754508
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 640866351
• Product: 2'-5' RNA ligase
• Protein accession: YP_001402293
• Protein GI: 153949525
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1514] 2'-5' RNA ligase
• TIGRFAM ID: [TIGR02258] 2'-5' RNA ligase

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.00058753
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAATA CCGTTGACGA ATTAAAACGT GTCCGCCGCC TATTCTTTGC CCTGACACTG 
CCGGATGCCA TGCAACAAGA GATTGTGCAA TGGCGAGCTG GCCATTTCTC GCCAGAGGCG 
GGTCGCCCTG TCGCGGCGGC GAATCTGCAC CTGACACTGG CGTTCCTTGG TGAAGTCAGT 
GCGACAAAAG CCCAGGTGTT ACAGCAGCAA GCCGGGCGTA TCCAACAAGC AGGTTTCAGC 
GTGACATTAG ATGATATCGG CCATTGGCCC GGTTCCGGCG TGATTTGGCT GGGATGTAAG 
AACCCCCCTC GTGGCCTGTT GCAATTGGCG CAGTTGCTGC GCTCCCAGGC AGCACGTAGT 
GGCTGTTATC AAACGCCGCT GCCGTTTCAT CCCCATGTTA CTCTGTTGCG TAACGCAACC 
CGCCCAGTGG CATTACCTGC CAAGAGCGGC AATGAGACCT TCCAGGCGGA CCATTTCTCG 
CTGTATGAAT CGGTCTTCGC GCGGGGCCGC ACCCGCTATA ACATCGTACA AAGCTGGCCG 
CTGGCTGGCA GTGAAAGGAA ACCAGATGCC TGCTAA 

 

Protein sequence

MTNTVDELKR VRRLFFALTL PDAMQQEIVQ WRAGHFSPEA GRPVAAANLH LTLAFLGEVS 
ATKAQVLQQQ AGRIQQAGFS VTLDDIGHWP GSGVIWLGCK NPPRGLLQLA QLLRSQAARS 
GCYQTPLPFH PHVTLLRNAT RPVALPAKSG NETFQADHFS LYESVFARGR TRYNIVQSWP 
LAGSERKPDA C