| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3297 |
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| Symbol | truD |
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| ID | 5386231 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 3708146 |
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| End bp | 3709195 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640866312 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001402254 |
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| Protein GI | 153949499 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 56 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATGG AAAACCTGAC CTGGCTACAC GGTAAACCTA CGGCGAGCGG TATTTTAAAA
GCGAATCCGG AAGATTTTGT TGTCGTAGAG GATTTGGGAT TTGAACCGGA TGGGGAAGGT
GAGCATCTGC TGGTTCGTAT TCGTAAAAAT GGCTGCAATA CCCAATTCGT TGCTGATTAT
TTGGCGCGCT TTGCCAAACT TCATCCGCGG TTGGTGAGTT ATGCGGGGTT AAAAGACCGC
CATGCGGTCA CCGAACAGTG GTTTTGTTTA CACTTGCCAG GAAAAGAAGC GCCAGATCTG
GCCACCTTTG AGCTGGAAGG GTGTGAAGTA TTGGAAGCGG TGCGGCATAA AAGAAAATTA
CGCATTGGTT CACTGAAAGG CAATGCGTTT ACCTTAGTAC TGCGCCATAT TACGGATCGC
CAGGATGTGG AACAACGTTT ACAGCAAATA GCCGCCCAGG GCGTACCCAA CTATTTTGGT
AGCCAGCGGT TTGGCCGTGG TGGTAATAAT CTGGTGCAGG CCCGTTTATG GGCGAATAAT
GAAATTCGGG TAAAAGAACG CAGCAAACGT AGCTTTTATC TGTCGGCCAG TCGCAGCGCG
ATGTTCAATC TGATTAGCAG TCACCGCTTG GCGCAACAAC TGTCGACGAC GGTACTGGAG
GGTGATGCAT TACAATTATC CGGGCGTGGG AGTTGGTTTG TTGCTCAAGC GGATGAATTA
GCCACGTTGC AACAGCGCGT TACTGCGGGT GAACTGAATA TCACCGCGCC TTTACCGGGG
GACAGTGAAC TGGGTACCCA CGGTGAAGCA TTAGCCTTTG AACAGGCGTG TTTGGCAGAG
CAAACTGAAT TACTGTCATT GATTAAGCGT GAGCGCGTTG AAGGTAGCCG CCGGGCAGTA
CTGCTAAAAC CGCAGAATAT GATAAGCAAC TGGTGGGATG ATGTCACTCT TGAGCTGAGT
TTCTGGCTCC CTGCGGGGAG CTTTGCGACC AGTGTAGTGA GGGAAATAAT GAACCAGGAT
CGGGCTGATG ATACGGATAT TATTGAGTAA
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| Protein sequence | MDMENLTWLH GKPTASGILK ANPEDFVVVE DLGFEPDGEG EHLLVRIRKN GCNTQFVADY
LARFAKLHPR LVSYAGLKDR HAVTEQWFCL HLPGKEAPDL ATFELEGCEV LEAVRHKRKL
RIGSLKGNAF TLVLRHITDR QDVEQRLQQI AAQGVPNYFG SQRFGRGGNN LVQARLWANN
EIRVKERSKR SFYLSASRSA MFNLISSHRL AQQLSTTVLE GDALQLSGRG SWFVAQADEL
ATLQQRVTAG ELNITAPLPG DSELGTHGEA LAFEQACLAE QTELLSLIKR ERVEGSRRAV
LLKPQNMISN WWDDVTLELS FWLPAGSFAT SVVREIMNQD RADDTDIIE
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