| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3214 |
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| Symbol | rluD |
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| ID | 5388568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 3621825 |
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| End bp | 3622808 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640866223 |
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| Product | 23S rRNA pseudouridine synthase D |
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| Protein accession | YP_001402171 |
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| Protein GI | 153948512 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.000301584 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAAC AAGTACAACT CAGCGCAACG GTGGCCGAAT CTCAACTCGG TCAACGGTTA
GATCAGGCTT TGGCCGAATT GTTCCCAGAT TATTCAAGAT CTCGCATAAA AGAGTGGATT
TTGGATAGTC GGGTTACAGT CAATGGTAAA AAAATCAACA AGCCTAAAGA AAAAGTGTTG
GGTGGTGAGC TCGTCGCAAT TGACGCGCAA ATTGAGGAAG ATGCCCGTTG GGCGCCTCAA
GAAATCCCAC TTGATATCGT GTATGAAGAT AACGATATTC TGGTTATTAA TAAACCCCGA
GGTTTAGTTG TTCATCCTGG TGCTGGCAAT CCTGATGGCA CCGTGCTGAA TGCTTTGCTG
CATTATTATC CAGAAATCAT GGATGTTCCT CGCGCAGGCA TTGTACATCG CTTGGACAAG
GACACCACCG GATTGATGGT GGTTGCAAAA ACAGTCCCGG CACAGACCCG CTTGGTTGAA
GCGTTGCAAG CACGTGAAAT TACACGTGAA TATGAAGCAG TCGCTATCGG TAATATGACC
GCTGGCGGGA GAGTGGATGA GCCAATTTCT CGCCACTCGA CTAAACGCAC CCATATGGCA
GTACATCCAA TGGGCAAACC GGCGACGACA CACTACCGCA TTATGGAGCA CTTCCGTGCC
CATACCCGTC TGCGTCTGCG TCTGCGTTTG GAAACTGGCC GTACACACCA GATCCGTGTG
CATATGTCTC ATATTAACCA TCCGCTGGTG GGTGATCAGC TCTATGGTGG CCGCCCGCGT
CCGCCTAAAG GGGCGTCTGA TTCCTTTATT GCCATCTTGC GTGGCTTTGA TCGTCAGGCT
CTGCACGCAA CCATGCTACG TTTGTATCAC CCAATCAGCG GTATTCAAAT GGAATGGCAT
GCCGCATTAC CAGAAGATAT GGTTGAGCTG ATTAATGCGT TAAAAGCCGA TACTGAAGAA
TTTAAAGATC AGATGGATTG GTAA
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| Protein sequence | MAQQVQLSAT VAESQLGQRL DQALAELFPD YSRSRIKEWI LDSRVTVNGK KINKPKEKVL
GGELVAIDAQ IEEDARWAPQ EIPLDIVYED NDILVINKPR GLVVHPGAGN PDGTVLNALL
HYYPEIMDVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE ALQAREITRE YEAVAIGNMT
AGGRVDEPIS RHSTKRTHMA VHPMGKPATT HYRIMEHFRA HTRLRLRLRL ETGRTHQIRV
HMSHINHPLV GDQLYGGRPR PPKGASDSFI AILRGFDRQA LHATMLRLYH PISGIQMEWH
AALPEDMVEL INALKADTEE FKDQMDW
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