Gene YpsIP31758_3174 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_3174 
Symbol 
ID5387756 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp3573740 
End bp3579472 
Gene Length5733 bp 
Protein Length1910 aa 
Translation table11 
GC content46% 
IMG OID640866181 
Producthemagglutination domain-containing protein 
Protein accessionYP_001402134 
Protein GI153947282 
COG category 
COG ID 
TIGRFAM ID[TIGR01901] filamentous haemagglutinin family N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.361804 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAGTA AATTGTACAA ACTTATTTTT TGTCGTCGGC TGGGCTGCTT AATTGCCGTG 
GGAGAATTTA CCCGATCATA TGGCCGAGCC TTTTCGTCGA AAGGCGGTCA AGCCGGCAAT
AATCAGCGCC GGGCCGTTGG TATCTTAAGC CGTCTGGCGA TGATGACGGG CTTGGCGCTT
GGGATATTCC CCTTGCTGGT TCTGGCCCAT CCGGTGTTAC CGGTTAATGG CCATGTTGTC
ATCGGGCAAG GGATGTTGGA TCAGCAAAGC AATACGCTTA CCGTGACACA GCAAACGGAT
AAGTTAGCGA TTAATTGGGC TAGTTTTGAT ATCGCGCACG GACACAGTGT CATTTATGCC
CAGCCGGGTA GCCAGAGCAT TGCATTGAAT CAGGTGCAGG GGCAGAGCGC ATCGCAAATT
TATGGCCGCT TACAGGCAAA TGGTCAGGTC TTCTTGCTTA ACCCACGCGG GATACTGTTT
GGTAAAGAGG CGCAGGTTAA TGTCGGTGGG TTGGTGGCGA GCACGAAATA TATGTCAAAT
CCAGATTTTC TGTCTGGTGA CTACCGCCTG ATCGGGGGAG AGCGTGAAGG CAATATTATT
AATCAGGCGA ATTTACGCTC GGCCCCAGGG GGATATATCG CACTGGTGGG TAACCGGATT
GATAACCAGC GTTCAGGGTC TATCACCACC CCACAAGGGA ACACTGTGCT GGCAGTCGGT
CACAGCGTGA CCTTGAATCT GGACCATGGG AATTTATTAG GTGTACAAAT TCAGGGAGAA
ACCGTTGCTG CACTGATTCA AAATGGTGGG TTAATCCAGG CTGATGGCGG AGTGATTCAA
CTGACGGCTA AGGGTAAAGA TATGCTGATG GATACGGTGA TTGATAATAC CGGTATCCTG
CAAGCTAAAG GGTTGTCAGC GAAAAATGGT GCTATTTATC TTGATGGCGG TGGTGAGGGG
GTGGTCAGCC AGATGGGGAC CATCGATGTT AACAATCAGC AGGGGCGTGG AGGGCGTGCG
GTTGTTGAAG GGAAACGTAT TTATCTGAAT AAGAACAGTA ACATAGAAGC GCAGGGTTCT
GCTGGCGGTG GCACTGTTTT AGTGGGTGGG GGCTGGCAAG GCAAAGATAA CCAGATCAGA
AATGCCACGG CTGTGGTGAT GGATAAAGGC AGTAATATTG ATGTTTCGGC ATCTCGCAAC
GGGCCGGGAG GAACTGCGGT TTTATGGTCT GAGGATTACA CCGGTTTTCA CGGTAATATC
CGAGCCAGGG GCGGGCCTCA ATCAGGCGAT GGCGGTCGGG TTGAAACATC CAGCCAACGC
AATTTACAAG CTTTTGGGCA AGTGGATGCC AGTGCCGTTC GTGGATCCGC AGGTTATTGG
TTATTGGACC CTGCGGAGGT AACAATTGTT AGCAGTGGTG CTGAGAGTGG TGTAATGACT
AAAGTGGGTA ATATACCCGC AGAGTTTGTT TCTAGCGCCC ATATTTTTAT TCCAACGGCC
AATATTACTC AGATCCTCAA TAGGAGTATT AATACCCAGC TTAATAGTGG CACTAATGTT
ACGATAACCA CCAGCAACAA TAGTTTAACG GGGTGCCAAT GGTGCAATAT AACTGTACAA
GCCGATATCA CTAAAACGGC GGGAGCCGAT GCGACGCTGA CATTACAGGC TGACGGTAAT
CTTGTAGTTA ATAATAATAT TACCGCTGAT GCTGGAAAAT TAAATTTAAA TTTATTAGCA
GGAAATACCA CTGCGGATTC TGCCATCACG CTGAATAATA GCAAGGTTTT ATTAAATGGC
GGTGATTTTT TAGCTAAACA TGCCAATGAT AATAATACGG CACGTATTAG CTTACTGGGC
GGGCGATATG ATGTTGGCAA TTTCACCTTG GATGGGAATA CCGCATTAGC CTCACAAGTT
GGGGTGAATA TCAGTAATGC GGCTAATATT AGCGTCGCGG GCGAAACCGT TATCTCCGGT
GTGAGCAGTA ACAGCCGTGG GCAAGGGTGG CGTGGTATTG ATATATCAAA TAATTCGATC
TTAACGGGCG TGGGGAATAT GACTTTCTCG ATAGGCTCTA ACTCGAATGT TTCATGGATG
GGGTCATTCA CTAATGCAAC AATTACCAGT GATAATAATA TAATATTCCA AGGGACGGGG
AGTTCGTCAG GTGGAGTGGA CTTTGTTAAT AGCCGTATTT TGTCAAAATC TGGCCGTGTT
TTATTTGATA TAAATGGCAA TATTGTTGTT AAGAATGTTT ATGGGCTTCG GGTCAATAAT
TCACAGATCA GTGCTAAGGA TGTTAAATTT GCAGTCAATG TCACTGGAGT TGATGGTTTT
TTACTAAGAG ATAGTCATAT TACCGCAACT TCCGGTGATA TTAATGCCAA TGCTAATACC
ATCAATAAAG GTATTTGGAT CTCAGGTAAA ACCAATTTAA ACGCCAGTGG TAATGTTAAT
CTGCATGGTG TGACGACTAA TTCGGCCTAT GCGGGTGCTG ATGCAATAAA GATCAGCGGT
AATTCCAGTA GTAACAATGT CAATATTACC GCTGGTGGTC ATATCTCTCT GATCGCGGTT
AATGAAGGGA AAGAGATTGG AAGCACTGTT TCTGTAGATT ACGCCAATAT AATAGCTAAG
AATGGAGACT TTAATTTAAA TATTACTGGG GTGAAGGGGA GTCCTTTTAA TAACACTACG
ATAACTGCCA ACAATATTTC AATGAATGGC AATATTACCG CTAATGATGC GGTGTTGATG
ACTAATACAT TCCTCACGGC TAAAGGCGAT ATCAAAACTG ATTTAACCTC TCCCACTAAA
GGTTTATGGT TTAGGGGAAA TGGTGGGATG ACCGCGGCTA ATAATATACT CTTGGTTGCT
AACAGCACAT CGAGTGGAGA AGCAGTGAAA ATCAATGCGT CTTCATCGAA CAAAATGAAT
ATCACTGCAG GAAAAGATAT ATCTATAATA GCCGGTAATA GTAAAACAGC TACGGGACCT
AACATTAATA TTGAAAATGT CAATATAGAA ACCAATAATG GAAACTTTAC GACTAACGGC
ATAACAAGTA CATGGCTGTC GGGAGTGAAT GTTAGCGCGA ATGGTGTTGA TATAACCTCT
AATTCTACTG GCACCGGTGG CATAGTATTG GATAATACTA ATATCCTGAC AACAGTAGGT
GATATTAATA CAATAGTAAC CAATTCTTCC GGCAAAGGCA TTTGGATTAA ATCTAACTCA
ACATTGAATT CTAATAAAGA TATCACCTTG GTTGGAGTAT CCGCCGGACA GAATGAAGGG
GTCATTATTC AAGGTTCTTC AGATGCTTCA CGTAACAATA TCTCTGCTCA AGGGAATATC
ACCTTAATAG GTAAAACGGG CAATGGCTCT GGTCAACGTT CATTAATCAA TTTGGGTAAT
GTTAGTCTAA CATCAAGCGG AAAAAATATT GATATTAATG GTTCGTCAGT CGGTGCCGGG
GATGTTTATT TTACCAATGT AGAACTTAAT GCTACCGCAG GTAATGTTTC TATTTATGCT
GAAACGAAAA CCGCTTTATC GACATCATTA AATGCCGTAT TAAGCTTGGG GGGTAATAAC
AGTATCAAAG CTCAAAATGG ATGGCTTATT GGTAAAGCGT TTAATACGAC ACAAGGGGCG
GGTATTGGTT TTAGAGCCAA TAGTAGCTTA TCTGTTGACG GCAATATCAT TTTGAAAGGC
GAGACCGAAG GGGTTGGGGC CACACGCAAA GGGATTGATT TCTATGGCGC GAATACACTG
AATATTATTA AAGGTAGCCA ATTATCTCTC CTCGGTGAAA ATAAAGGGGC TCAAGATACC
TCAGGTGGTA ATGGCATAAG TTATACCAGC CCAGCTAGAT TAACGGTTAA TAATAATGGT
TCTTTAAAAA TGGAGGGGCG TTCAACCAGT GGCACGGGAA TTAACTTCCC AAGCAGCAAT
AATACGCTGG TATTCAATGG TGATGGTGAC ACGCTGATTA AAGGCAGCAG TGTCGCGGGT
ACGGGGGCCG CTATTTCCGG TGTTGTTAAT AATAGTACCG GCCCCATGAC GATTGAAGGA
ATCAGTACCG AGGGTGCCGG TGTTCACCTT TTCAGTGCAG AACATCGTAT TGATCGCATT
AATGTCACAG GGAGTTCAAC TCACGCCGAA GGTCTGCGGG TCAGTGGTAA TGCAGCGATT
GTCGATACCA CATTGACCGG AAAGTCGATC AATGGCAGTG GTGTGAAGAT TGATTCATTG
CCGGGCTCCA GTGTTGTTAC CCGTTCCGTC TTGGATAATG CCACGCTCAA TGGCAGCAGT
AGCAGTGGGA AAGGGGTGGA AATTACCAGT GATATCAATG GTATTCATCA CAGTTCGATT
AACGGAACGA CTACTGGCAC GGGCTACGGC ATTAATATTG GCGAAAATTT AAACGTTACC
GGGACCAGTG AAGCTGACTT GTTGATTCTA CAAGGTGTGG CGACAACAGG TACTGGCACC
GGAATAAAAC TCAATGGTAA TAATGATTTA AGTAATACCA GTTTAAATAG TTCTGCGGTT
GATGGTATCG CTTTGGATAT CACGGGCCCG CTAGCTAACC AAGGGAATGT GATCCTAAAC
GGCACGGCTT CTGGTTCGGG GATTGGTGCG CAGGTCAATG GTTCGCTAAG TGATAGTGTG
GTTAACGGTA CGTCGACGAA TGGTATTGGT GTGCAAATTA ATGGATCGCT TGAAAACAGC
CGCATCAACG GCATTTCGGC CAATGGCAGC GGGGTTAAAG TCGATGGCGA GACCACGCTG
GATAACGCCA CGCTCAATGG CCACAGCAGC GAAGGCAAGG GTGTCGATCT GGCGGCCAAT
CTGTCCGGCA ACCATGGCAG CGCAGTGCAT GGCGACACGG TCAATGGCAC TGGCATCGAC
GTGGGTAAAG GCGTCACCCT GAGTGGTGGT GGCACGGATG AACCGTTAAC GGTCAGCGGC
AATGCCAGCG GTGAGAAAGG CACCGGCGTG CAACTGGGCG GCAATAATAC CCTCGATAAC
ACCACGCTGA GCGGCAACGC CACCGATGGT CATGGGGTAG AGATTAACAG CCGATTAATC
AATAACGGCA ATACTACGAT TAATGGCAGA ACGTCTGATG ATGGTCACGG CGTACATATT
AATGGGGCCA TCAGTGGCGG AGAAATCAAT GGTCATTCAG ACAATAGCCA CGGTGTTTTC
CTCGATGAAA GTGCGTTACT TAATGACATC GTTATCGGAG GAGGGACCGG CTCATATAAA
CCGCCGGTGT TTATAGCATT GCCTAAAACC ATCGGTGAGC ACGTGACTCT TAATGGTAAA
CCGATTGATA AAACCCAGCC AGAAGGCAGT AAGGCACGTG AAGGTGATAA CCTGACAAGG
GGTAAATATA CACCTTTGCC ACCGGTTACT GACCCTGAAT TGCCCCCAGC ATCAACCGAT
GATGAGAAAA ATACAAAACA GACCTCGACG CTAACCCCAT CTCAGAAAAG AGAGGATCCA
GACATGTTGA TAATGGCGCG AAACCATATC TTGAGTACCC TTGAAGGGCG TGATTTATCT
TCATCTGTTG TCACTGAATC GGAGCAAAGT GCGGCGGGCG TTACCGGAAT TATGGTTTGT
CTCCCTCTGA GTGAGGCCTC TGAACATGAA CCTTGCGATA CGTATATTTT AGACAAGGGA
CAACCCCATC TCCCCATGAT GGTCAAGAAG TAA
 
Protein sequence
MNSKLYKLIF CRRLGCLIAV GEFTRSYGRA FSSKGGQAGN NQRRAVGILS RLAMMTGLAL 
GIFPLLVLAH PVLPVNGHVV IGQGMLDQQS NTLTVTQQTD KLAINWASFD IAHGHSVIYA
QPGSQSIALN QVQGQSASQI YGRLQANGQV FLLNPRGILF GKEAQVNVGG LVASTKYMSN
PDFLSGDYRL IGGEREGNII NQANLRSAPG GYIALVGNRI DNQRSGSITT PQGNTVLAVG
HSVTLNLDHG NLLGVQIQGE TVAALIQNGG LIQADGGVIQ LTAKGKDMLM DTVIDNTGIL
QAKGLSAKNG AIYLDGGGEG VVSQMGTIDV NNQQGRGGRA VVEGKRIYLN KNSNIEAQGS
AGGGTVLVGG GWQGKDNQIR NATAVVMDKG SNIDVSASRN GPGGTAVLWS EDYTGFHGNI
RARGGPQSGD GGRVETSSQR NLQAFGQVDA SAVRGSAGYW LLDPAEVTIV SSGAESGVMT
KVGNIPAEFV SSAHIFIPTA NITQILNRSI NTQLNSGTNV TITTSNNSLT GCQWCNITVQ
ADITKTAGAD ATLTLQADGN LVVNNNITAD AGKLNLNLLA GNTTADSAIT LNNSKVLLNG
GDFLAKHAND NNTARISLLG GRYDVGNFTL DGNTALASQV GVNISNAANI SVAGETVISG
VSSNSRGQGW RGIDISNNSI LTGVGNMTFS IGSNSNVSWM GSFTNATITS DNNIIFQGTG
SSSGGVDFVN SRILSKSGRV LFDINGNIVV KNVYGLRVNN SQISAKDVKF AVNVTGVDGF
LLRDSHITAT SGDINANANT INKGIWISGK TNLNASGNVN LHGVTTNSAY AGADAIKISG
NSSSNNVNIT AGGHISLIAV NEGKEIGSTV SVDYANIIAK NGDFNLNITG VKGSPFNNTT
ITANNISMNG NITANDAVLM TNTFLTAKGD IKTDLTSPTK GLWFRGNGGM TAANNILLVA
NSTSSGEAVK INASSSNKMN ITAGKDISII AGNSKTATGP NINIENVNIE TNNGNFTTNG
ITSTWLSGVN VSANGVDITS NSTGTGGIVL DNTNILTTVG DINTIVTNSS GKGIWIKSNS
TLNSNKDITL VGVSAGQNEG VIIQGSSDAS RNNISAQGNI TLIGKTGNGS GQRSLINLGN
VSLTSSGKNI DINGSSVGAG DVYFTNVELN ATAGNVSIYA ETKTALSTSL NAVLSLGGNN
SIKAQNGWLI GKAFNTTQGA GIGFRANSSL SVDGNIILKG ETEGVGATRK GIDFYGANTL
NIIKGSQLSL LGENKGAQDT SGGNGISYTS PARLTVNNNG SLKMEGRSTS GTGINFPSSN
NTLVFNGDGD TLIKGSSVAG TGAAISGVVN NSTGPMTIEG ISTEGAGVHL FSAEHRIDRI
NVTGSSTHAE GLRVSGNAAI VDTTLTGKSI NGSGVKIDSL PGSSVVTRSV LDNATLNGSS
SSGKGVEITS DINGIHHSSI NGTTTGTGYG INIGENLNVT GTSEADLLIL QGVATTGTGT
GIKLNGNNDL SNTSLNSSAV DGIALDITGP LANQGNVILN GTASGSGIGA QVNGSLSDSV
VNGTSTNGIG VQINGSLENS RINGISANGS GVKVDGETTL DNATLNGHSS EGKGVDLAAN
LSGNHGSAVH GDTVNGTGID VGKGVTLSGG GTDEPLTVSG NASGEKGTGV QLGGNNTLDN
TTLSGNATDG HGVEINSRLI NNGNTTINGR TSDDGHGVHI NGAISGGEIN GHSDNSHGVF
LDESALLNDI VIGGGTGSYK PPVFIALPKT IGEHVTLNGK PIDKTQPEGS KAREGDNLTR
GKYTPLPPVT DPELPPASTD DEKNTKQTST LTPSQKREDP DMLIMARNHI LSTLEGRDLS
SSVVTESEQS AAGVTGIMVC LPLSEASEHE PCDTYILDKG QPHLPMMVKK