| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3139 |
|---|
| Symbol | sbcC |
|---|
| ID | 5386285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 3531729 |
|---|
| End bp | 3535418 |
|---|
| Gene Length | 3690 bp |
|---|
| Protein Length | 1229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640866146 |
|---|
| Product | nuclease SbcCD, C subunit |
|---|
| Protein accession | YP_001402099 |
|---|
| Protein GI | 153949358 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0419] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.642669 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTT TGAGCCTACG TCTGAAAAAC ATTAACTCAT TACAGGGCGA ATGGAAGATA
GATTTCACTG CCGAACCTTT TGCCAGTAAC GGCTTATTTG CTATCACCGG CCCAACTGGC
GCGGGAAAAA CCACGCTGTT AGATGCTATC TGTCTGGCGT TGTACCACCA AACCCCTCGC
CTCATCGTAA CCCCCAGCCA GAATGAACTG ATGACGCGCC ATACTGCAGA ATCACTGGCA
GAAGTTGAAT TTGACGTGAA AGGTATCCGT TATCGCGCCT TTTGGAGCCA GCGCCGTGCC
AGAAACAGCC CAGATGGCAA TCTGCAAGCC CCCAAAGTAG AACTGGCCTT ATGCGAAAAC
GGCAAAATCT TGGCCGATAA GGTCCGCGAT AAATTAGATA TGATCGCGGC AATCACCGGT
CTGGACTTTG GCCGTTTTAC CAAGTCCATG ATGCTGTCAC AGGGGCAATT TGCCGCCTTC
CTCAATGCAG ATGCCAATGA TCGCGCTGAG TTACTGGAAG AATTGACGGG AACCGACATC
TACGGACGTC TATCTGAACG CGTATTTGAA AAACATAAAC AAGCCAAGAT CGATCTGGAT
GCATTGCACC AACGTGCCAG CGGCATTGAA CTGTTAAATG AAGAACAACG CCTGGCCCTG
GCACAGCAAA TTGATGCACT GAGTCAACAA GAGCAGCAGC TCAGTAAAGA ACAACTCGTC
ACGCAAAACC AAATAAACTG GCTAACAGGT TGGCAGCAGC AGCAACAACA CGTACAGCAA
TATCAGCAGC AACAGGTGCT CGTTGAGCAA GAGTATCAAC AGGCACTACC CGGCCTACAA
CGTTTAGCGC GTAGCGAACC GGCAGAAAAA TTGCGCCCGT TGCAACGAGA ACGTGACCGT
AGCCAAAAAG ATTTACAACA AACACAGCAA CGCATCACCG CATTGGCACA ACAACAGCAG
CAATATCTGG CACAGCTCAC ACCACTGACT CAGGCAGTAG AGCAAGCCAC TGCGGCACGC
CAACAGCAAC AGCTTAATCA ACATGAGCAA GAAACACTCA TCGAACAACG GATCGTGCCG
CTGGATAACC TTATCACCCA GCAGCAGCAG ACATTGTCAC AACTTGCAGG GCAAATACAG
CAATTACGCG CTAAAGAGCA GCAAAACAGC CAACAACTTG CGCTGAATGA GCAAAAACTA
TTGCAGACCC ATCAACGCCT GCAACAGCTA GCAGACTATG CCAATTTACA TGCCCATCAT
CAGCACTGGG AAAAACATCT TCCCTTATGG CATGAGCAGT TCCGCCAATT ACAACTACAG
CAACAACAAT CAGCTCAAAG TGAGCAACAA CTACACCAAC AAACAACCTT ACTCGCCACG
CTGCAACAGC AGGCTACAAC ACTAAGTGCG CAAGAGAAAC AACAACAAGT GGCCTTAGCG
GAGGCTCGCG CACAGGCAAG CTATCTTCAG CAGAAATTAT TAGTCCTTGA ACAACAGCAA
CCTTCAGCAC AGTTGCGCCA GCAACTAAAC GAGTTCAATG AGCAACGTCA GATATGCCAA
CAACTGGCGG CTTTATCGCC TTTAGCACAA CAAATACAAG CACTCTATGA TAAGCAGCAG
CAACAATTTA CGGCTCAGCA GCAACAGCTT AAACAGTTAG AGCAACAGTT AACCGAAAAA
CGCCAGTTAT ATCAGCAGCA GAAACAACAT CTGGTTGATT TAGAAGCCTT ACTGGAACGC
GAAAAACAGC TTGTCACACT GGAAGCAGAA AGAGCCAAAC TGCAACCAGG AGATGCCTGC
CCGCTATGTG GTGCTGTGGA GCACCCGGCG ATTGCTGCGT ACCAAGCAGT GAAACCCTCA
GAAACAGCCG TGCGAGTTGC AAAACTGCGC CTACAGGTCG AACAGCTTGA CACTGAAGGC
ACTGAGTTGC GTACCCAAGT TGCAAGCATG CAACAACATC AGCAGCGTAT AGAGCAAGAG
TTACAAGACC ATCGCCAACA GTTAGCTGCA TATCAGCAAC GTTGGCAAAC ACTGGCACAA
CCGTTATCAC TGGCCTTCAC CTTGAATGAA CCTGACGCAT TAGCCCTGTG GCTAGAGCAA
CATGAGCAGC AAGAACAGGC GTGTCAACTA AAGCTGGTGG AGTATGAGCG TCTGACTCAG
CAGTATCAGC AGGCCAAAGA TATCCTGACC CAGTTGGAAC AACGGCAGCA AGAACATCAA
CAACAGTTGG CACTGATCAC TGAACGCCAA AAAAATGCTC AACAAACCTA CCAACAGCTG
CAATCGCAAT ATCAGCACCA GCAAGAAGCA CTTATAGCTC AGCAGCAAGT GTTAAACCAT
ACGCTGACTG AATTGTCCTT ATCAGTACCC GATGCCGATC AACAACAGAA TTGGCTAGCA
CAGCGGGAAG AGGAATGTCA GCGCTGGCAA CAACATCAGC AAGAGCAACA GCGGCTCACT
ATTGAACAAA AAACGCTGGA AACACGTATT GAGAATGAAC GGCGTCATTT ACAGGAGTGT
ATTGACCAAT TATCGGCGCT AAGTCAACAA CGCCAGCAAG CTGAAACGCT ATTACAGCAG
CAAATCCAGC AGCGCCGGGC ACTGTTTGGT GAAGATATCG TTGCCGAAGT CCGCCAGCGA
TTACGCTTAC AGCAGCAACA GGCAGAGCTT GCCCAGCAAA ACGCAGAAAA AGCCCTACAA
CAGGTTCAAT CCCAACTGAA TAGGCTATCA GGTGAACTGA CCGGGCTGGA GCAACAATGC
CAACAGTATC AGCAACGTGC TACCACCACA CAGGCTGAAT TGCAACAAGC ACTGTCCACC
AGCGAATTTG CTGATGAAAC GGCATTAACC GCAGCCCTGT TAAGTGAGGA AGAAAGGCAG
CATCTACAAC AACTGCAACA GCAATTAAAT GAGCGACGGC AACAAGCTCA GATCCGCCTG
CAACAAGCCA GGGAGATATT GGATCAACAT TTACAGCTTT GTCCCCAAGG TGTCGATAAG
TCCTCTGAAT TAACCTTATT ACAACAACAG TCAGAACAGC TATTGGCACA ACTGAAAACC
ACAACGTTAC GGCAAGGCGA ACTACGCAAT CAGTTAGAAA GCGACACCAC TCGACGTCAT
AATCAACGTA CGCTATTTGA ACAAATTGAG CGTAGTCAGC AGCAATATGA TGACTGGAGT
TACCTCAATC AATTAATTGG CTCCAAAGAA GGCGATAAAT TCCGTAAATT TGCGCAAGGT
CTCACACTCG ATCATCTGGT TTATCTGGCC AATAACCAAC TTAGTCGTTT ACATGGGCGC
TATCTATTAC AACGTAAGAC TACAGATGCA TTGGAATTAC AGGTGGTAGA TACCTGGCAA
GCGGATGCCA TACGCGATAC TCGCACCCTG TCAGGAGGAG AGAGTTTTCT GGTGAGTCTG
GCGCTAGCAT TAGCACTGTC TGATTTAGTC AGCCATAAAA CCAGTATTGA CTCACTGTTT
CTTGATGAAG GCTTCGGTAC GTTGGATGCT GAAACATTGG ATACCGCACT GGATGCCTTG
GATAGCCTGA ATGCTTCCGG CAAAACTATT GGGGTGATAA GCCATGTAGA GGCAATGAAA
GATCGGATCC CGGTGCAGAT AAAAGTGAAA AAAGTTAACG GGTTAGGCGT CAGCCGTTTG
GATAATGCCT TCCGAGTCAA TCAAGACTGA
|
|---|
| Protein sequence | MKILSLRLKN INSLQGEWKI DFTAEPFASN GLFAITGPTG AGKTTLLDAI CLALYHQTPR
LIVTPSQNEL MTRHTAESLA EVEFDVKGIR YRAFWSQRRA RNSPDGNLQA PKVELALCEN
GKILADKVRD KLDMIAAITG LDFGRFTKSM MLSQGQFAAF LNADANDRAE LLEELTGTDI
YGRLSERVFE KHKQAKIDLD ALHQRASGIE LLNEEQRLAL AQQIDALSQQ EQQLSKEQLV
TQNQINWLTG WQQQQQHVQQ YQQQQVLVEQ EYQQALPGLQ RLARSEPAEK LRPLQRERDR
SQKDLQQTQQ RITALAQQQQ QYLAQLTPLT QAVEQATAAR QQQQLNQHEQ ETLIEQRIVP
LDNLITQQQQ TLSQLAGQIQ QLRAKEQQNS QQLALNEQKL LQTHQRLQQL ADYANLHAHH
QHWEKHLPLW HEQFRQLQLQ QQQSAQSEQQ LHQQTTLLAT LQQQATTLSA QEKQQQVALA
EARAQASYLQ QKLLVLEQQQ PSAQLRQQLN EFNEQRQICQ QLAALSPLAQ QIQALYDKQQ
QQFTAQQQQL KQLEQQLTEK RQLYQQQKQH LVDLEALLER EKQLVTLEAE RAKLQPGDAC
PLCGAVEHPA IAAYQAVKPS ETAVRVAKLR LQVEQLDTEG TELRTQVASM QQHQQRIEQE
LQDHRQQLAA YQQRWQTLAQ PLSLAFTLNE PDALALWLEQ HEQQEQACQL KLVEYERLTQ
QYQQAKDILT QLEQRQQEHQ QQLALITERQ KNAQQTYQQL QSQYQHQQEA LIAQQQVLNH
TLTELSLSVP DADQQQNWLA QREEECQRWQ QHQQEQQRLT IEQKTLETRI ENERRHLQEC
IDQLSALSQQ RQQAETLLQQ QIQQRRALFG EDIVAEVRQR LRLQQQQAEL AQQNAEKALQ
QVQSQLNRLS GELTGLEQQC QQYQQRATTT QAELQQALST SEFADETALT AALLSEEERQ
HLQQLQQQLN ERRQQAQIRL QQAREILDQH LQLCPQGVDK SSELTLLQQQ SEQLLAQLKT
TTLRQGELRN QLESDTTRRH NQRTLFEQIE RSQQQYDDWS YLNQLIGSKE GDKFRKFAQG
LTLDHLVYLA NNQLSRLHGR YLLQRKTTDA LELQVVDTWQ ADAIRDTRTL SGGESFLVSL
ALALALSDLV SHKTSIDSLF LDEGFGTLDA ETLDTALDAL DSLNASGKTI GVISHVEAMK
DRIPVQIKVK KVNGLGVSRL DNAFRVNQD
|
|---|
| |