Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3129 |
Symbol | |
ID | 5385089 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 3520617 |
End bp | 3521297 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640866137 |
Product | short chain dehydrogenase |
Protein accession | YP_001402090 |
Protein GI | 153949352 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 45 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGCACAG CGAAAAGAAC AGCATTGGTT ATCGGTGCTT CACGGGGGTT AGGGCTAGGG TTGGTTGATG AGCTTAGTCG CCGCGGATGG TCTGTCACCG CGACCACACG TGGCGCGGCT CAAGATACGT CAGCACATGC CGCCCATTGG TTAAAATTAG ATATTAATCA GCCAGAAAGC ATTAAGCAGT TCTTACTACA AGTACAGGGG CAGCGATTCG ACCTGATATT TGTTAACGCC GGAATCTCTG GGCCAGCACA CCAATCTGCG ATCGATGCCA CACCCGATGA AATCCAGGAA CTGTTCCAGA CTAACGCCAT CTCGCCTATC CGAATTGCTC AACATTTGCT GGCACAACGC AATCCAACCC AGAGCGTATT GGCGTTTATG TCTTCCCAGT TAGGCAGTAT TGAACGCAAT GTTTCTGGGC ATAAACCGTT GTATTCAGCC AGTAAAGCCG CATTGAATAT GATGACGCGT AATCTGGTGG CTGAAGTTGC AGATCCGACC TTGACGGTAT TATCAATTCA TCCCGGTTGG GTGAAAACGG ATATGGGCGG TGATGCGGCA CCGTTGACGA TTACTACCAG TGTGAAGGGC GTGGTCGATC AAATCGAACA GGCTTCAGGG AAAGGGGGCC ACGGATTTAT TGACTATCAG GGGCATTCAT TACCGTGGTA A
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Protein sequence | MGTAKRTALV IGASRGLGLG LVDELSRRGW SVTATTRGAA QDTSAHAAHW LKLDINQPES IKQFLLQVQG QRFDLIFVNA GISGPAHQSA IDATPDEIQE LFQTNAISPI RIAQHLLAQR NPTQSVLAFM SSQLGSIERN VSGHKPLYSA SKAALNMMTR NLVAEVADPT LTVLSIHPGW VKTDMGGDAA PLTITTSVKG VVDQIEQASG KGGHGFIDYQ GHSLPW
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