Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3121 |
Symbol | secD |
ID | 5386968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 3511174 |
End bp | 3513021 |
Gene Length | 1848 bp |
Protein Length | 615 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640866128 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001402081 |
Protein GI | 153949040 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.000987582 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTAAACC GTTATCCTTT GTGGAAGTAT CTGATGCTGA TCGTTGTGAT CTTCGTCGGT CTGCTATATG CGCTTCCCAA CCTTTATGGT GAGGATCCGG CTGTTCAAAT CACTGGTGCG CGAGGAATCG CCGCCAGTGA GACAACGCTG GTCCAAGTCC GTGACGTTTT AGAAAAAGAC AACATAGCGA GCAAGTCTAT TGCGCTGGAA AACGGTGCAA TCCTGGCTCG CTTTAGAGAT CCTGATGTCC AGCTACGTGC TCGCGAAGCA CTGGTGGAGG CGTTGGGTGA TAAATATGTT ATCGCGCTGA ACCTGGCTCC GGCAACACCT TCCTGGCTTG CCAAATTGGG TGCAGAACCC ATGAAATTAG GTCTTGACCT GCGAGGTGGT GTTCATTTCC TGATGGAAGT GGATATGGAT ACCGCGCTGG GCAAACTGCA AGAGCAAACG ATGGATACCT TACGCACTGA TTTGCGTGAG AAAAATATCC CGTATGCCAC AGTACGTAAG CTCGATAACT ATGGTGTTGA AGTGCGTTTT CGCGATGATA AAGCGCGCAA TGATGCTATC AGCTACCTCT CTTCGCGCCA TCGTGATTTG GTGTTCAGCT CCAATGGCAG CAACACGCTA AAAGCGGTGA TGAGTGATGA GCGTTTGCGG GAAGCTCGGG AATATGCGGT TCAACAAAAT ATTACAATTC TGCGTAACCG AGTTAACCAG CTAGGTGTTG CAGAGCCGTT AGTCCAACGG CAGGGTTCTG ACCGTATTGT TGTTGAACTA CCGGGTATTC AAGACACCGC GCGTGCTAAA GAGATTCTGG GTGCGACTGC AACGTTGGAA TTCCGTTTAG TCAACACTAA CGTTGATGCT TCTGTCGCAG CTTCTGGCCG TGTACCTGGC GATTCGGAAG TGAAAAATAC CCGTGAAGGC CGCCCGGTTG TCTTGTACAA ACGAGTGATC TTGACCGGTG ACCATATTAC TGATTCAACC TCCAGTACCG ACGAGTATAA CCAGGCTCAG GTTAATATCT CGCTCGATAG TGCAGGGGGG TCGACGATGT CTAATTTTAC TAAAGACAAT ATCGGCAAGC CGATGGCGAC TTTATTCGTA GAATATAAAG ACAGCGGTAA AAAAGATGCG AATGGCCGGT CTATTCTGGT TAAACAAGAA GAAGTTATCA ATGTGGCGAC CATCCAGTCG CGTTTAGGTA ACAGTTTCCG CATTACCGGC ATTGATAACC CAGCTGAAGC GCGGCAACTT TCCCTGTTAC TGCGTGCTGG TGCGTTGATT GCACCTATCC AGATTGTGGA AGAGCGTACT ATTGGGCCAA CGTTGGGTTC CCAGAATATT GCGCAAGGCT TAGAAGCCTG CTTATGGGGT CTGGCTGTAT CGATCCTGTT TATGGTGGTT TACTACCGTA AGTTTGGTGT GATTGCCAGT ACTGCACTGA TGGCCAACCT GGTGTTAATC GTCGGCGTGA TGTCCTTATT ACCGGGGGCG ACATTAACCA TGCCGGGTAT TGCCGGGATT GTATTGACGC TAGCGGTAGC AGTAGATGCT AACGTACTGA TTAACGAGCG AATAAAAGAA GAGTATAGAA ACGGGCGGAC GATCCAGCAA GCGATTCATG AAGGGTACAA GGGTGCCTTC TCAAGTATCG TCGATGCGAA CATAACGACG CTTATCACAG CCATTATTCT TTATGCTGTG GGTACTGGTT CGATTAAAGG CTTTGCTATT ACAACGGCAA TTGGTGTTGT AACGTCAATG TTCACCGCAA TAGTCGGTAC TCGTGCCATC GTCAACCTGC TTTACGGCGG CAAGCGCATT AACAAGCTGT CTATTTGA
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Protein sequence | MLNRYPLWKY LMLIVVIFVG LLYALPNLYG EDPAVQITGA RGIAASETTL VQVRDVLEKD NIASKSIALE NGAILARFRD PDVQLRAREA LVEALGDKYV IALNLAPATP SWLAKLGAEP MKLGLDLRGG VHFLMEVDMD TALGKLQEQT MDTLRTDLRE KNIPYATVRK LDNYGVEVRF RDDKARNDAI SYLSSRHRDL VFSSNGSNTL KAVMSDERLR EAREYAVQQN ITILRNRVNQ LGVAEPLVQR QGSDRIVVEL PGIQDTARAK EILGATATLE FRLVNTNVDA SVAASGRVPG DSEVKNTREG RPVVLYKRVI LTGDHITDST SSTDEYNQAQ VNISLDSAGG STMSNFTKDN IGKPMATLFV EYKDSGKKDA NGRSILVKQE EVINVATIQS RLGNSFRITG IDNPAEARQL SLLLRAGALI APIQIVEERT IGPTLGSQNI AQGLEACLWG LAVSILFMVV YYRKFGVIAS TALMANLVLI VGVMSLLPGA TLTMPGIAGI VLTLAVAVDA NVLINERIKE EYRNGRTIQQ AIHEGYKGAF SSIVDANITT LITAIILYAV GTGSIKGFAI TTAIGVVTSM FTAIVGTRAI VNLLYGGKRI NKLSI
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