Gene YpsIP31758_3121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_3121 
SymbolsecD 
ID5386968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp3511174 
End bp3513021 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content49% 
IMG OID640866128 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001402081 
Protein GI153949040 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.000987582 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAAACC GTTATCCTTT GTGGAAGTAT CTGATGCTGA TCGTTGTGAT CTTCGTCGGT 
CTGCTATATG CGCTTCCCAA CCTTTATGGT GAGGATCCGG CTGTTCAAAT CACTGGTGCG
CGAGGAATCG CCGCCAGTGA GACAACGCTG GTCCAAGTCC GTGACGTTTT AGAAAAAGAC
AACATAGCGA GCAAGTCTAT TGCGCTGGAA AACGGTGCAA TCCTGGCTCG CTTTAGAGAT
CCTGATGTCC AGCTACGTGC TCGCGAAGCA CTGGTGGAGG CGTTGGGTGA TAAATATGTT
ATCGCGCTGA ACCTGGCTCC GGCAACACCT TCCTGGCTTG CCAAATTGGG TGCAGAACCC
ATGAAATTAG GTCTTGACCT GCGAGGTGGT GTTCATTTCC TGATGGAAGT GGATATGGAT
ACCGCGCTGG GCAAACTGCA AGAGCAAACG ATGGATACCT TACGCACTGA TTTGCGTGAG
AAAAATATCC CGTATGCCAC AGTACGTAAG CTCGATAACT ATGGTGTTGA AGTGCGTTTT
CGCGATGATA AAGCGCGCAA TGATGCTATC AGCTACCTCT CTTCGCGCCA TCGTGATTTG
GTGTTCAGCT CCAATGGCAG CAACACGCTA AAAGCGGTGA TGAGTGATGA GCGTTTGCGG
GAAGCTCGGG AATATGCGGT TCAACAAAAT ATTACAATTC TGCGTAACCG AGTTAACCAG
CTAGGTGTTG CAGAGCCGTT AGTCCAACGG CAGGGTTCTG ACCGTATTGT TGTTGAACTA
CCGGGTATTC AAGACACCGC GCGTGCTAAA GAGATTCTGG GTGCGACTGC AACGTTGGAA
TTCCGTTTAG TCAACACTAA CGTTGATGCT TCTGTCGCAG CTTCTGGCCG TGTACCTGGC
GATTCGGAAG TGAAAAATAC CCGTGAAGGC CGCCCGGTTG TCTTGTACAA ACGAGTGATC
TTGACCGGTG ACCATATTAC TGATTCAACC TCCAGTACCG ACGAGTATAA CCAGGCTCAG
GTTAATATCT CGCTCGATAG TGCAGGGGGG TCGACGATGT CTAATTTTAC TAAAGACAAT
ATCGGCAAGC CGATGGCGAC TTTATTCGTA GAATATAAAG ACAGCGGTAA AAAAGATGCG
AATGGCCGGT CTATTCTGGT TAAACAAGAA GAAGTTATCA ATGTGGCGAC CATCCAGTCG
CGTTTAGGTA ACAGTTTCCG CATTACCGGC ATTGATAACC CAGCTGAAGC GCGGCAACTT
TCCCTGTTAC TGCGTGCTGG TGCGTTGATT GCACCTATCC AGATTGTGGA AGAGCGTACT
ATTGGGCCAA CGTTGGGTTC CCAGAATATT GCGCAAGGCT TAGAAGCCTG CTTATGGGGT
CTGGCTGTAT CGATCCTGTT TATGGTGGTT TACTACCGTA AGTTTGGTGT GATTGCCAGT
ACTGCACTGA TGGCCAACCT GGTGTTAATC GTCGGCGTGA TGTCCTTATT ACCGGGGGCG
ACATTAACCA TGCCGGGTAT TGCCGGGATT GTATTGACGC TAGCGGTAGC AGTAGATGCT
AACGTACTGA TTAACGAGCG AATAAAAGAA GAGTATAGAA ACGGGCGGAC GATCCAGCAA
GCGATTCATG AAGGGTACAA GGGTGCCTTC TCAAGTATCG TCGATGCGAA CATAACGACG
CTTATCACAG CCATTATTCT TTATGCTGTG GGTACTGGTT CGATTAAAGG CTTTGCTATT
ACAACGGCAA TTGGTGTTGT AACGTCAATG TTCACCGCAA TAGTCGGTAC TCGTGCCATC
GTCAACCTGC TTTACGGCGG CAAGCGCATT AACAAGCTGT CTATTTGA
 
Protein sequence
MLNRYPLWKY LMLIVVIFVG LLYALPNLYG EDPAVQITGA RGIAASETTL VQVRDVLEKD 
NIASKSIALE NGAILARFRD PDVQLRAREA LVEALGDKYV IALNLAPATP SWLAKLGAEP
MKLGLDLRGG VHFLMEVDMD TALGKLQEQT MDTLRTDLRE KNIPYATVRK LDNYGVEVRF
RDDKARNDAI SYLSSRHRDL VFSSNGSNTL KAVMSDERLR EAREYAVQQN ITILRNRVNQ
LGVAEPLVQR QGSDRIVVEL PGIQDTARAK EILGATATLE FRLVNTNVDA SVAASGRVPG
DSEVKNTREG RPVVLYKRVI LTGDHITDST SSTDEYNQAQ VNISLDSAGG STMSNFTKDN
IGKPMATLFV EYKDSGKKDA NGRSILVKQE EVINVATIQS RLGNSFRITG IDNPAEARQL
SLLLRAGALI APIQIVEERT IGPTLGSQNI AQGLEACLWG LAVSILFMVV YYRKFGVIAS
TALMANLVLI VGVMSLLPGA TLTMPGIAGI VLTLAVAVDA NVLINERIKE EYRNGRTIQQ
AIHEGYKGAF SSIVDANITT LITAIILYAV GTGSIKGFAI TTAIGVVTSM FTAIVGTRAI
VNLLYGGKRI NKLSI