| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3117 |
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| Symbol | ribD |
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| ID | 5385898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 3506859 |
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| End bp | 3507968 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640866124 |
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| Product | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase |
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| Protein accession | YP_001402077 |
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| Protein GI | 153947163 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.237897 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCCCG ATGAGTTCTA TATGGCCCGA GCTTTTGAAC TGGCGCGTTT GGGGCGCTTT
ACGACGTCGC CTAACCCCAA TGTAGGCTGT GTCTTGGTTC GTGATGGCGA GATCGTCGGC
GAAGGTTACC ACTTACGTGC TGGAGAGCCG CATGCTGAAG TGCATGCATT ACGTATGGCG
GGTGAGAAAG CGCGAGGAGC CACGGCTTAT GTCACTCTCG AGCCGTGTAG CCATTATGGT
CGGACGCCAC CTTGTGCTGA TGCGTTGGTC GCCGCAGGTG TGATACGGGT TGTTGCTGCC
ATGCAGGATC CTAATCCAGA AGTTGCCGGG CGAGGGCTGT ATAAATTAAA ACAGGCCGGT
ATCGCTGTCG ATCATGGCTT GATGTTAGCT GAGGCCGAGG CTGTTAACCT TGGTTTCTTG
AAGCGTATGC GGACTGGTTT CCCTTATGTG CAATTGAAAA TGGCAGCATC ATTGGACGGG
CGTACAGCCA TGGCATCAGG TGAGAGCCAG TGGATTACCT CACCACAGGC ACGCCAGGAT
GTGCAGCGCT TTAGGGCCGA GAGTTCAGCT ATTCTTAGTA CCAGTGCCAC TGTATTGGCA
GATGACCCTT CGCTGACGGT ACGTTGGCAG GATTTAGATA CCGAAACGCA GGTTTTGTAT
CCTCATAATA GTATTCGACA GCCAGTAAAA ATTATACTCG ATAGCCATAA CCGCGTGACT
CCACGGCATA AAGTGATACA GCAAGACGGC CCATGCTGGC TGGCTCGCGT AGATGCCGAT
GATCAGCCAT GGCCTGGCAA TATCGAACAA CTGTTGCTAC CACGTTATGG TAATGGCGTG
GACTTGGTTG TGTTGATGAT GCAATTGGGG AAACGGAATA TTAACTCTGT CTGGGTAGAG
GCTGGGCCAC AACTGGCGGG TGCATTGTTA CAAGCCGGAG TGGTGGATGA GTTAATCCTT
TATATCGCCC CCAAACTCTT GGGCAGTGAT GCGCGTGGAT TATGCGAGCT AGCTGGGCTG
ACGAATTTAT CGCAAGCGCC TGAGTTTGCA TTTAGCGATG TACGGCTGGT CGGTCCGGAC
TTGCGTTTAC GCTTGAAGCC AAAGTATTAA
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| Protein sequence | MQPDEFYMAR AFELARLGRF TTSPNPNVGC VLVRDGEIVG EGYHLRAGEP HAEVHALRMA
GEKARGATAY VTLEPCSHYG RTPPCADALV AAGVIRVVAA MQDPNPEVAG RGLYKLKQAG
IAVDHGLMLA EAEAVNLGFL KRMRTGFPYV QLKMAASLDG RTAMASGESQ WITSPQARQD
VQRFRAESSA ILSTSATVLA DDPSLTVRWQ DLDTETQVLY PHNSIRQPVK IILDSHNRVT
PRHKVIQQDG PCWLARVDAD DQPWPGNIEQ LLLPRYGNGV DLVVLMMQLG KRNINSVWVE
AGPQLAGALL QAGVVDELIL YIAPKLLGSD ARGLCELAGL TNLSQAPEFA FSDVRLVGPD
LRLRLKPKY
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