Gene YpsIP31758_3112 details

Gene Information

• Locus tag: YpsIP31758_3112
• Symbol: dxs
• ID: 5388083
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 3502108
• End bp: 3503967
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640866119
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001402072
• Protein GI: 153950304
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 39
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTCTTG ATATAGCCAA ATACCCGACA CTGGCACTTG CGGAGAACCC AGAAGAACTG 
CGCATGCTGC CGAAAGAAAG CTTGCCGAAG TTATGTGATG AACTCCGGCA GTATTTGCTC 
ACCTGTGTCA GCCGATCCAG CGGGCATTTT GCTTCCGGGT TAGGCGTAGT CGAACTGACT 
GTCGCTTTAC ATTACGTTTA TAATACGCCG TTTGATCATT TGATATGGGA CGTAGGTCAT 
CAGGCTTATC CGCACAAAAT ATTGACCGGC CGCCGTGATC GAATCTCTAC TATTCGTCAA 
AAAGATGGTT TGCACCCTTT TCCATGGCGC GGAGAGAGTG AATACGACGT GCTTTCTGTT 
GGTCACTCCT CTACATCGAT CAGCGCGGGT CTGGGTATGG CGGTTGCTGC CGAGCGGGAA 
GGTAAAGGGC GACGTACCGT TTGCGTTATC GGTGATGGTG CTATCACCGC AGGTATGGCT 
TTTGAAGCAA TGAGTCATGC CGGAGATATT CACTCAGACA TGCTGGTTAT CCTCAATGAT 
AATGAAATGT CTATTTCAGA AAATGTAGGT GGCCTGAACA ACCATTTGGC TCAATTATTA 
TCTGGAAAAC TCTATGCCAG CCTACGTGAA GGCGGTAAAA AAGCATTTTC TGCCTTACCA 
CCAATCAAAG ATCTGCTGAA ACGAACCGAA GAGCATCTGA AAGGGATGGT AGTCCCCAGT 
ACGTTGTTTG AAGAGTTAGG TTTTAATTAT ATTGGTCCCG TTGATGGGCA TGATGTACAC 
ACGTTGACGC AAACGCTAAA AAATATGCGC GACCTGAAAG GTCCACAACT TCTGCACATC 
ATGACTAAAA AGGGCAAAGG CTATGCTCCG GCAGAAAAGG ATCCAATCGG TTGGCATGCC 
GTACCTAAGT TTGATCCCGC CTCCGGCACC TTGCCTAAAA GCCAGAGCAG CCTCCCCACT 
TACTCCAAAA TATTTGGCGA ATGGTTATGC GAAACCGCAG CCAAAGATAG CAAATTAATG 
GCAGTGACAC CGGCGATGCG TGAAGGATCC GGCATGGTGC GTTTCTCGCG CGAATATCCG 
CAACAATATT TCGATGTCGC CATCGCTGAA CAACATGCAG TGACCTTTGC CGCAGGCCTG 
GCTATTGGTG GCTACAAGCC TGTGGTTGCC ATCTATTCGA CTTTCTTGCA ACGCGCCTAT 
GATCAGTTGA TCCATGATGT TGCTATCCAA AATTTGCCCG TGCTCTTTGC CATTGACCGT 
GGCGGTTTGG TCGGTGCTGA TGGGCAGACT CACCAAGGTG CATTCGATCT TTCATTTATG 
CGCTGTATTC CAAACATGGT CATTATGGCA CCAAGTGATG AGAATGAGTG CCGTCAGATG 
CTATACACCG GCTATCACCA TAATGGACCT GCCGCAGTAC GTTACCCACG AGGTAATGGT 
ACGAGCGCGG TGCTGGAGCC ATTGGAGATG TTGCCGATCG GCAAAGGGGT ACTACGCCGT 
GAAGGTGAGA AGATTGCCAT CCTTTGCTTT GGTACGTTAC TTGCTCAGGC ACAGCTTGCC 
GCAGAAAACC TCAATGCCAC GCTGGTGGAT ATGCGTTTCG TGAAACCGCT AGATGAAGAA 
TTGGTATTGG AAATGGCAGC AAAACATCAG GTATTAGTGA CTGTCGAAGA AAACGCCATC 
ATGGGGGGGG CGGGTAGCGG TGTGAATGAG CTATTAATGG CAAAACGGCG ATGGGTCCCA 
GTACTCAATA TTGGTTTACC CGATCTATTT GTGCCACAAG GTGAGCAAGA CGAAATGCGA 
TCTGAACTCG GTTTAGATGC GGCGGGTATA CAGCGTCAAA TTGAAGCTTG GCTAGCTTAA 

 

Protein sequence

MSLDIAKYPT LALAENPEEL RMLPKESLPK LCDELRQYLL TCVSRSSGHF ASGLGVVELT 
VALHYVYNTP FDHLIWDVGH QAYPHKILTG RRDRISTIRQ KDGLHPFPWR GESEYDVLSV 
GHSSTSISAG LGMAVAAERE GKGRRTVCVI GDGAITAGMA FEAMSHAGDI HSDMLVILND 
NEMSISENVG GLNNHLAQLL SGKLYASLRE GGKKAFSALP PIKDLLKRTE EHLKGMVVPS 
TLFEELGFNY IGPVDGHDVH TLTQTLKNMR DLKGPQLLHI MTKKGKGYAP AEKDPIGWHA 
VPKFDPASGT LPKSQSSLPT YSKIFGEWLC ETAAKDSKLM AVTPAMREGS GMVRFSREYP 
QQYFDVAIAE QHAVTFAAGL AIGGYKPVVA IYSTFLQRAY DQLIHDVAIQ NLPVLFAIDR 
GGLVGADGQT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGYHHNGP AAVRYPRGNG 
TSAVLEPLEM LPIGKGVLRR EGEKIAILCF GTLLAQAQLA AENLNATLVD MRFVKPLDEE 
LVLEMAAKHQ VLVTVEENAI MGGAGSGVNE LLMAKRRWVP VLNIGLPDLF VPQGEQDEMR 
SELGLDAAGI QRQIEAWLA