Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3084 |
Symbol | |
ID | 5384583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 3472029 |
End bp | 3473732 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640866091 |
Product | putative ABC transporter, periplasmic binding protein |
Protein accession | YP_001402044 |
Protein GI | 153950496 |
COG category | [R] General function prediction only |
COG ID | [COG4533] ABC-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.0617058 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCATTA TTCACCGGCT TACCCAATAT GAGCGTTTAT ATCAAAAATT TGGTGACCAC CCGGTGGCGA CTACCGTGGC TGACGTGGCT AGTTTACTCT TTTGTAGCGA ACGGCATGCC CGCACCCTGA TTCAGCAACT ACAGATGAAG AGTTGGCTAA GCTGGCATTC ACAAGTGGGT AGAGGGAAAC GAGCGCAACT GCAATGCCTG AAAAAACCTG ATGCATTACG GGCTATTTAC CTGCAACAGT TCCTTGAGCA AGGCGATCAT CAGGCGGCAT TCTCAATAGC ACAATTGGAA CCCGAGCGCC TACAGACCTT ACTTACCCCC CATATGGGCG GACAATGGCA AGCCGATAGC CCTATTCTGC GTATCCCCTA CTACCGCGAG CTGGAACCGC TTAATCCCAT GAATGCTACA GGGCGGGCAG AACAGCACCT GATTTATACT TTGCATGCTG GGCTGACACG GTTTAATACA GGTGACCCGT TGCCTAAACC TGATTTGGCT CATCACTGGC AAATCAGCGC AGATGGCTTA ACCTGGCAGT TCTTCTTACG CAGCCAACTA CGTTGGCATA ATGGCGACCA CATTCATGGT AAGCAATTAT TGCAAACACT GGAGATTCTG CGCGCAAACC GACGTAGCCA ACCCAGTTTT GCTAATATTG TTACTATCAC TCTCCCCCAC GCTTTATGCC TACAATTTAC CCTTTCCCAA CCAGATTATT GGCTAGCACA CCGGCTGGCT GATTTACCCT GTAGGTTTTT TCATCCAGAC GATCCCTTTT TAGGTGCGGG TCCTTTTAAA TTAGCGACCT TTGATAAACA TTTAGTTCGG CTAAAGCAGC ACGAATTTTA CCATTTGCAA CATCCCTATC TGGACATTAT CGAGTACTGG ATCACCCCTA GCCTGACGGT AAATTCAACA AATGGCAGTT GCCAGCATCC GGTTCGCATC ACCATCGGCC AAGAGGAAGA GTTCCCACTG GCCCGCCCCG TACAGCGCAG CATGAGCCTC GGATTCTGCT ACCTGGCTAT TAATCGCCAT CGTAGCAACC TCACTCCACA GCAAATAGCC AAGCTACTGA TGTTAGTCCA AACCTCGGGT ATATTAGAGG CGCTTTCCAT CAGCCGTGAC GTAATAACGC CCTGCCATGA AATCCTTCCA GGCTGGCCTA TTCCACAGTT TTCGACGGAT GAAAATCCCT CCCTTCCCGC CTGTTTGGTT CTGACCTATC AACCGCCGAT GGAGCTTGAG AGTGTCGCTG AGCAACTAAA AATAGTATTA GCCGCTCATG GCTGTACATT AGAGATCCGC GCCTGCCATG ATAAACAGTG GCAAGATGTT GACAAAATTA AAGAGAGCGA TTTACTGTTG GCCGATCATT TAGTCGGTGA ATCGCCAGAG GCCACAATGG AGAGCTGGCT ACGGCTGGAC CCTCTGTGGC GCGGAATTTT ACAGAACGAA CAGTGGAACC AGCAGCAAAA AACGCTGACC TTCATTCAGC AGATAGAAAG CGCGCCAGAA CGTTTTCGCC AATTACAGGC ACATTACGAT GACCTGATGT TAGCGGGACT GATTTTGCCG CTGTTTAACT ATGAATATCA GGTCAATGCC CCATCACGCA TCAATGGGGT TACATTAACG GCATATGGTT GGTTCGATTT CTGTCAAGCC TGGCTACCGC CAATAACGAA TTAA
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Protein sequence | MRIIHRLTQY ERLYQKFGDH PVATTVADVA SLLFCSERHA RTLIQQLQMK SWLSWHSQVG RGKRAQLQCL KKPDALRAIY LQQFLEQGDH QAAFSIAQLE PERLQTLLTP HMGGQWQADS PILRIPYYRE LEPLNPMNAT GRAEQHLIYT LHAGLTRFNT GDPLPKPDLA HHWQISADGL TWQFFLRSQL RWHNGDHIHG KQLLQTLEIL RANRRSQPSF ANIVTITLPH ALCLQFTLSQ PDYWLAHRLA DLPCRFFHPD DPFLGAGPFK LATFDKHLVR LKQHEFYHLQ HPYLDIIEYW ITPSLTVNST NGSCQHPVRI TIGQEEEFPL ARPVQRSMSL GFCYLAINRH RSNLTPQQIA KLLMLVQTSG ILEALSISRD VITPCHEILP GWPIPQFSTD ENPSLPACLV LTYQPPMELE SVAEQLKIVL AAHGCTLEIR ACHDKQWQDV DKIKESDLLL ADHLVGESPE ATMESWLRLD PLWRGILQNE QWNQQQKTLT FIQQIESAPE RFRQLQAHYD DLMLAGLILP LFNYEYQVNA PSRINGVTLT AYGWFDFCQA WLPPITN
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