| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3019 |
|---|
| Symbol | |
|---|
| ID | 5388492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 3397606 |
|---|
| End bp | 3400035 |
|---|
| Gene Length | 2430 bp |
|---|
| Protein Length | 809 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640866024 |
|---|
| Product | efflux ABC transporter, permease protein |
|---|
| Protein accession | YP_001401979 |
|---|
| Protein GI | 153948635 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.00602267 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTGGC GTTGGTTTTG GCGTGAGTGG CGCGCGCCTT CACTGCTCAT TGTCTGGCTG
GCGCTCACGC TGGCAGTAGC CTGCGTATTG GCGTTAGGGA CTATCAGCGA TCGAATGGAA
AAAGGGCTGA GTCAGCAAAG CCGCGATTTC CTGGCCGGTG ATCGGGTTCT CCGGGCGGCA
CACCCTGTTC CAGAGGCGTG GTTACAGGAA GCGAAGCAGC AGGGGCTGGC GGTTAGCCGC
CAACTCTCAT TTTTGACCAT GACCTTTGGC GGTGATCGCC CACAGTTGGC TGAGGTGAAA
GCCACTGATC TGGCCTACCC ACTCTATGGG AAATTAGAAA CCTTACCTAA GGAGGCAGAG
TTGCAACCGG GTACGGTGCT GGTGGCACCG CGATTACTGG CGCTACTGGG GGTTAAGGTT
GGCGACATGT TGGATGTTGG CGATACCTCG CTAAAAATTA TCGGTGAGAT TATTCAAGAA
CCCGATGCCG GGTTTAATCC GTTTCAAACC GCACCACACA TTCTGATCAA TCTGGCTGAT
GTTGAGAAAA CCGGTGCGGT GCAACCGGGT AGCCGTTTGA CTTACCGCTA TATGTTTGCT
GGCACCCCGG AGGCTGTGAC GCAGTTTAGC GACTGGCTCA CCCCGCAACT AACACCAGAG
CAGCGTTGGT ATGGCCTGCA AGAATCCGGT GGCGCATTGG GGAAATCCCT GCAACGGGCG
CAACAGTTCT TATTATTATC GGCGTTGCTG ACCTTATTAC TGTCGATTGC TGCGGTCGCC
GTCGCTATGG GCCACTATTG CCGCAGCCGC TATGATCTGG TGGCTGTGCT GAAAACATTG
GGGGCCGGGC GCCGTGCTCT GCGTCGATTG ATTATCGGCC AATGGCTATC CGTGCTGGCA
TTGGCAGGCC TCTGTGGCAG TGTCATTGGT CTCTTATTTG AGAGGCTATT GGTTCGGTTA
TTAGCGCCGG TATTGCCCGC AGAGTTACCC ACTGCCGGGC TATGGCCATG GGTGTGGTCA
ATGGGATCAT TAGTATTGAT TTCGTTATTG GTGGGGGTGC GGCCATATCG TCAATTACTC
GCCACTCAGC CATTGCGGGT ATTGCGCCGT GATGTGGCGG CCAATGTCTG GCCATTGCGT
TATTTTATTC CAGTGATGCT GTTGGTGGTA ATTGGGTTAT TGGCATTGCT GATGGGGGGG
AACTCCCTGC TATGGGCCAT TCTGGGGGGC ATGGTGGTAT TGGCGTTGCT GCTCGGTGGG
ATCGGCTGGG GCAGCTTGCT GTTGCTGCGT CACCTAACGG TAACCCGTTT ATCACTGCGG
TTGGCCATTA ATCGGCTTCT GCGCCAACCG TGGATGACGC TGACTCAGCT TGCGGCATTT
TCACTCTCCT TCATGTTGTT GGCGTTGTTA CTGGTGCTAC GAGGTGATCT CTTGGATCGA
TGGCAGCAGC AATTGCCACC GGATAGCCCG AACTATTTTT TGCTGAATAT GACGCCCCAG
CAGGTACCAC AAGTCACGGC ATTTTTGGCT CAGCATCACA TTCAACCCTC GACGTTCTAC
CCCATTGTGC GGGTCCGGTT GACGGAAATT AATCAGCAAC TGGCTACTGA GCGAGTGAGT
GAAGACTCAC CCGGTGGTGA GGCAGTTAAC CGTGAGTTGA ATTTAACCTG GCAGCAGGAT
TTACCCGCCC ATAATGTATT GACCGCAGGG CAGTGGCCTC CTAAAGCCGA TGAAGTCTCG
ATGGAGCAGG GGATTGCCGA TCGGCTGGGG ATTAAAATTG GCGATAAACT GACTTTCAGC
GGTGATACTC AGTCATTTGG GGCGACGGTC AGCAGTATCC GTCAGGTTGA TTGGGACAGT
TTACGGCCTA ATTTTTACTT TATTTTCCCA CCCGGCGCAT TGGATCAACA ACCACAAACC
TGGTTGACCA GCTTCCGCTA TCACGGTGAT GGAGAGGCCT TGGTTCAGTT AAATCGCCAG
TTCCCAACGC TGAGTTTGTT AGACATTGGT GCGATGCTGA AACAGGTCGG CCAAGTGTTA
CAACAGGTCA GCCGGGCGCT GGAAGTGATG GTGGTGTTGG TGATTCTGTG TGGCACCTTG
TTGCTACTGG CACAGGTACA AGTGGGGATG CGCCAGCGTA GGCAGGAGTT GGTGGTCTAC
CGCACGCTCG GAGCGAGTAA ACGCTTACTT CGAGGCACAT TATGGTGGGA ATTTGCTTTA
CTGGGCTTGG TGGCGGGGCT GGCGGCGGCG ATAGGTGCTG AAGCCGCGCT CTGGGCATTG
CAGAGGTTAG TCTTTGATTT CCCATGGCAG CCAAACTGGA TGATGTGGTG GATCTTACCC
CTGGCGGGGG CGTCGTTGCT GTCAGTGTGC GGTGGCTGGC TAGGGGTTCG GCTATTGCGA
GGTCAGGCGC TCTTTCGTCG TTACGAGTAG
|
|---|
| Protein sequence | MIWRWFWREW RAPSLLIVWL ALTLAVACVL ALGTISDRME KGLSQQSRDF LAGDRVLRAA
HPVPEAWLQE AKQQGLAVSR QLSFLTMTFG GDRPQLAEVK ATDLAYPLYG KLETLPKEAE
LQPGTVLVAP RLLALLGVKV GDMLDVGDTS LKIIGEIIQE PDAGFNPFQT APHILINLAD
VEKTGAVQPG SRLTYRYMFA GTPEAVTQFS DWLTPQLTPE QRWYGLQESG GALGKSLQRA
QQFLLLSALL TLLLSIAAVA VAMGHYCRSR YDLVAVLKTL GAGRRALRRL IIGQWLSVLA
LAGLCGSVIG LLFERLLVRL LAPVLPAELP TAGLWPWVWS MGSLVLISLL VGVRPYRQLL
ATQPLRVLRR DVAANVWPLR YFIPVMLLVV IGLLALLMGG NSLLWAILGG MVVLALLLGG
IGWGSLLLLR HLTVTRLSLR LAINRLLRQP WMTLTQLAAF SLSFMLLALL LVLRGDLLDR
WQQQLPPDSP NYFLLNMTPQ QVPQVTAFLA QHHIQPSTFY PIVRVRLTEI NQQLATERVS
EDSPGGEAVN RELNLTWQQD LPAHNVLTAG QWPPKADEVS MEQGIADRLG IKIGDKLTFS
GDTQSFGATV SSIRQVDWDS LRPNFYFIFP PGALDQQPQT WLTSFRYHGD GEALVQLNRQ
FPTLSLLDIG AMLKQVGQVL QQVSRALEVM VVLVILCGTL LLLAQVQVGM RQRRQELVVY
RTLGASKRLL RGTLWWEFAL LGLVAGLAAA IGAEAALWAL QRLVFDFPWQ PNWMMWWILP
LAGASLLSVC GGWLGVRLLR GQALFRRYE
|
|---|
| |