Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_2983 |
Symbol | |
ID | 5386287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 3363081 |
End bp | 3363560 |
Gene Length | 480 bp |
Protein Length | 159 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 640865989 |
Product | hypothetical protein |
Protein accession | YP_001401945 |
Protein GI | 153947876 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 45 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTAATT TGATTTATGC AAGTGTTAAT GGTAAAAAAC AAGGTTTAAT ATCTGCCGGA TGCTCGTCAC TCAACTCTAT TGGTAATCGG TGCCAGGCAG GTCATGAAGA TCAAATACAG GTATTAAGTT TAAATCATAG TATAAGCCGC CAACAGAATG TAGCTCATCA CCCTGTTCAT TTTGTTAAGC CTATAGATAA GTCATCTCCA TTGCTAGGCG TGGCAATATC TGAAAATGAA CGAATAGATG TTGTCTTTTA TTTTTATAGA GTAAATTCTG CTGGGCAGTT GGAACTTTAT TATGAAGTTA AACTGACAGA TGCGAGTATT GTAGATATCA CCAGTGTTTA TCCACACTCA ATAGATAATA ATGAAATGAT ACCGTATGAA AAAATTCAAT TAAAATATAA ATCCATAGCG TGGGATCACA AAAGTGCGGG TACTTCTGGT TACAGTGTAT GGGAAGATAG GGTTTACTAG
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Protein sequence | MSNLIYASVN GKKQGLISAG CSSLNSIGNR CQAGHEDQIQ VLSLNHSISR QQNVAHHPVH FVKPIDKSSP LLGVAISENE RIDVVFYFYR VNSAGQLELY YEVKLTDASI VDITSVYPHS IDNNEMIPYE KIQLKYKSIA WDHKSAGTSG YSVWEDRVY
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