| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2980 |
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| Symbol | pbpC |
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| ID | 5385970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 3358225 |
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| End bp | 3360588 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640865986 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_001401942 |
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| Protein GI | 153947311 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCATCC CAACCTTAAT GGCAACCAAA CGCCTGTTGC AAAATATCCT GATGGCCCTC
TTTCTGTTGG CCCTCTTGGT CATCGGCTTT CGGCTGTGGC CACACCCGCC CTTGTCTCAG
GGGCTCCCAC TCTCTACGGC TTACTATGAT CGGCACGGCA CGCTATTACG TCTTTCGCTG
GCTAATGATG ATCGTTATCG CCTGTGGACA CCGTTGGAAG AGATCTCCCC ATTGGTGATA
CAGGGTATCC AACTGCATGA AGACCGCGGT TTCTATTATC ATCCCGGTGT TAATCCCATT
AGCCTGTTAC GCGGGTTCTG GCAAAGCTAT GTACAAGGCG GCAGGCAACA GGGCGGTTCA
ACCCTGACCA TGCAGTTGGC ACGGATGCAC TGGCATCTCA ATACCCGTTC GCCAACAGGT
AAATTGCGAC AAATCGCCCG AGCTATCCAA CTGGAACTGA GCTATTCCAA GCACGATATT
TTAGAGGCTT ACCTGAATTA CGCCCCTTAT GGCCGTAATA TCGAAAGTAT TGCCGCTGCC
AGCCTGATTT ATTTTGATAA AAAACCCCAG CAACTGACGC TGCCAGAAGC CCTGACATTG
GCGGTATTGC CCCAATCGCC CAGTTACCGC ATTGATCCCA CCACCGGTGT GCTGGGGAGC
GCCCTGACCC AAGCCCGTAA CCGGCTATTC GTTCGCTGGC AACAAACGTA CCCCACCGAT
AGCAGCCAAA TGGCACTATT CCAGTTACCG CTCAGCCTGC GTCAACCCGA AAAAATGCCC
TATATCGCGC CGCATTTTAT TGAACAGATC CGGCGGCAAA ATCAACAACT GGCGAACACC
CAGAGTCAGG TTGACACCAC ACTGGATGCC AATCTGCAAC AACTGGTAGA AAAACAGGTC
GAGGCCTTTA TCCGCCGTAA TAACAGCCGG GGCATCCATA ATGCGGCGGT ATTATTGCTG
GATACACGGG ATATGGGCGT TCGGGCGCTG GTGGGGTCGG CAAATTATTA TGACCGAGAA
ATTCAGGGGC AAGTTAACGG CACCAATGCC AAACGCTCCC CCGGTTCGAC ACTGAAACCC
TTTATTTATG CTCTAGGGCT AGAACAGGGG ATACTGCATC CGATGACCAT CCTGAAAGAT
GTACCCTCTT CTTTCGGGGC CTATGCGCCA GAGAATTTTG ACCACCGTTT TCTCGGGCCA
GTGACCGCCA CGGACGCCTT GAATTTCAGC CGAAACATTC CTGCGGTGTA TGTCGCATCC
CGTTTAAGAC AACCAACGCT ATACCAATTT TTACGTTTAT CCGGCGTCAC CAATATGGCC
AGTGAAAACC ATTACGGTTT ATCACTGGTA CTGGGGGGCG GTGAAATTAC CCTACAGGAG
CTGGCGCGGC TCTATGCCAT GTTGGCGAAT CGCGGCACAC TGCACCCCAT ACAAATGGTA
CAAACAGATA AAACGCTGCC CTCCATTCGT CTGTTAAGCG AGGCGGCCAG TTTCATCACG
CTTGATATGT TGCGTCAGCA CCGCCGCCCC GGTGATACCT TGGCACAAAG CCCCACCTCG
CTACCGGTCT ACTGGAAAAC CGGGACCTCT TGGGGATTCA GAGATGCCTG GAGTGCGGGG
ATTTTTGGCC CTTATGTGTT AATCGTCTGG GAAGGCAACT TTGCGGGTAA GGGCAACAGC
GCCTTTGTCG GTGCCGATGC CGCCGCACCG TTATTCTTTA ATATTATTGA CAGTATTCAG
GCTAACTATC CAGCGCTGCG CGAGCCTAAA CATCCTTGGC CGCCACAGTT AAAACGGGTG
GCTATCTGTC TGGCCAGCGG CAATTTACCC ACGCCTTGGT GTCAGCAGCA AGGTAAAACC
TGGTTTATTC CGGGGAAATC GCCGATCAAA GTCGATACGG TCTATCGCCC CGTCGTGATT
GATATAAATA GTGGTCAGGC CGCTTGTCTA CCTTATGACC GCAGCCAGAC CCGTACTGAA
GTTTTTGAGT TCTGGCCATC GGATCTGGCC AATGTATTTG CTCAAGCGGG CTTGCCGAAA
CGCCAACCAC CTGACCGCTC TCACTGCAAA GAAGGGAATA CTCTCGCATC GGGTAATGCA
CCACGTATCA CCTCACCGCT GCGCAATACC ACCTACACCC TGCGCCAATC ACAACAGGGC
CGTGATCAGA TTGTATTCAG CGCCACTCTT GATGCGGATA GCACCACCAC TTACTGGTTT
GTTGACGATA TCTATCTAGG CAGCAGCACC AGTAAAAAAT CCATCGATTG GCATCCGACC
CGCAGCGGTC AATACCGCAT TCGAGCAATT GATGATCATG GCCGCGCTGA TAGTAGGCTA
ATTCGTGTTG AGAAAGTGGA TTAA
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| Protein sequence | MRIPTLMATK RLLQNILMAL FLLALLVIGF RLWPHPPLSQ GLPLSTAYYD RHGTLLRLSL
ANDDRYRLWT PLEEISPLVI QGIQLHEDRG FYYHPGVNPI SLLRGFWQSY VQGGRQQGGS
TLTMQLARMH WHLNTRSPTG KLRQIARAIQ LELSYSKHDI LEAYLNYAPY GRNIESIAAA
SLIYFDKKPQ QLTLPEALTL AVLPQSPSYR IDPTTGVLGS ALTQARNRLF VRWQQTYPTD
SSQMALFQLP LSLRQPEKMP YIAPHFIEQI RRQNQQLANT QSQVDTTLDA NLQQLVEKQV
EAFIRRNNSR GIHNAAVLLL DTRDMGVRAL VGSANYYDRE IQGQVNGTNA KRSPGSTLKP
FIYALGLEQG ILHPMTILKD VPSSFGAYAP ENFDHRFLGP VTATDALNFS RNIPAVYVAS
RLRQPTLYQF LRLSGVTNMA SENHYGLSLV LGGGEITLQE LARLYAMLAN RGTLHPIQMV
QTDKTLPSIR LLSEAASFIT LDMLRQHRRP GDTLAQSPTS LPVYWKTGTS WGFRDAWSAG
IFGPYVLIVW EGNFAGKGNS AFVGADAAAP LFFNIIDSIQ ANYPALREPK HPWPPQLKRV
AICLASGNLP TPWCQQQGKT WFIPGKSPIK VDTVYRPVVI DINSGQAACL PYDRSQTRTE
VFEFWPSDLA NVFAQAGLPK RQPPDRSHCK EGNTLASGNA PRITSPLRNT TYTLRQSQQG
RDQIVFSATL DADSTTTYWF VDDIYLGSST SKKSIDWHPT RSGQYRIRAI DDHGRADSRL
IRVEKVD
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