Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_2912 |
Symbol | nagD |
ID | 5387832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 3283137 |
End bp | 3283889 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640865912 |
Product | UMP phosphatase |
Protein accession | YP_001401874 |
Protein GI | 153947843 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
TIGRFAM ID | [TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.00141408 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAATCA AAAGCGTTAT TTGCGATATC GATGGGGTGT TATTACATGA CAACACCGCC ATTAAGGGCG CCAATGACTT TTTAGCCCGT ATTCAGGATG CTGGAATGCC ATTGGTGATC CTAACCAACT ACCCATCCCA GACGGCGCAA GATCTGACTA ACCGCTTTAT CACTGCCGGG CTTGATGTGC CGGAAAGCGC GTTTTATACC TCAGCCATGG CAACGGCCGA CTTTTTACGC CGTCAGGATG GCAAAAAAGC CTATGTTATT GGTGAGGGTG CTTTAGTTCA CGAACTCTAT AAAGCTGGCT TTACCATCAC CGATATCAAT CCTGATTTTG TTATTGTCGG TGAGACGCGT TCTTATAACT GGGACATGAT GCATAAAGCA GCCTATTTTG TTGCCAATGG TGCACGTTTT ATTGCCACTA ACCCGGACAG CCACGGCCAC GGCTTCGCCC CTGCCTGTGG TGCTCTGTGC GCACCTATTG AAAAAATATC AGGCCGCAAA CCGTTTTATG TCGGTAAGCC AAGTCCATGG ATCATCCGTG CGGCGCTGAA TAAAATGCAG GCGCATTCCG AAAGCACCGT GATTGTCGGC GATAACTTAC GTACTGATAT TTTAGCGGGC TTCCAGGCCG GTCTGGAGAC GATTCTGGTC TTATCCGGTG TCTCAACCCT TACTGATATC GACGCCATGC CGTTCCGTCC AAGCTACGTT TACCCCTCGG TTGCCGACAT CGATATTATC TAA
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Protein sequence | MTIKSVICDI DGVLLHDNTA IKGANDFLAR IQDAGMPLVI LTNYPSQTAQ DLTNRFITAG LDVPESAFYT SAMATADFLR RQDGKKAYVI GEGALVHELY KAGFTITDIN PDFVIVGETR SYNWDMMHKA AYFVANGARF IATNPDSHGH GFAPACGALC APIEKISGRK PFYVGKPSPW IIRAALNKMQ AHSESTVIVG DNLRTDILAG FQAGLETILV LSGVSTLTDI DAMPFRPSYV YPSVADIDII
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