Gene YpsIP31758_2643 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_2643 
SymbolpotH 
ID5388125 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand- 
Start bp2996789 
End bp2997754 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content50% 
IMG OID640865632 
Productputrescine transporter subunit: membrane component of ABC superfamily 
Protein accessionYP_001401608 
Protein GI153947498 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1176] ABC-type spermidine/putrescine transport system, permease component I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.204712 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATACCAG AATCCACGAG TGGGGCCGCA GAACCCCCGA TCCGCTCAGT TGGGCCGGTC 
AGGGCGCTGA TACAACGCTT CCAAATGGCG CATGGCCGTA AACTGGTCAT CGCCATGCCA 
TATTTATGGC TATTCCTCTT ATTTATGCTG CCTTTCCTGA TCGTGTTTAA AATCAGTTTG 
GCGGAAATGG TGCGGGCGGT TCCCCCTTAT ACCGATCTCA CCACTTGGCT GGACGGCAAG 
CTGGATATCT CGCTAAATCT GGGTAATTAC CTGCTACTGC TGGATGATCC GTTATATATC 
GATGCCTATT TGCAATCGTT GCAAGTGGCG GCGGTATCAA CGCTGTGCTG CCTGCTTATT 
GGCTACCCAT TGGCTTGGGC GATTGCTCAC AGTAAACCAT CGACCCGCAA CATCTTATTG 
CTGTTGGTTA TCTTGCCGTC ATGGACGTCA TTTCTGATCC GGGTTTATGC CTGGATGGGG 
ATCCTAAAAA ATAACGGCAT CTTGAATAAC TTTTTAATAT GGACCGGAAT TATTGATCAG 
CCGCTAGTCA TCTTACACAC CAATCTGGCC GTTTATATTG GCGTGGTGTA TTCCTACCTG 
CCATTTATGG TGTTGCCGAT TTATACCGCA TTAACGCGAC TGGATTACTC GCTGGTAGAA 
GCTGCGTTGG ATCTCGGGGC CAGGCCGTTC AAGACGTTTA TCAGTGTGAT TATCCCGTTG 
ACTAAAGGCG GTATTGTCGC TGGCTCTATG TTGGTATTTA TCCCTGCAGT AGGGGAGTTT 
GTGATCCCCG AGCTCCTTGG TGGGCCGGAT AGCATCATGA TTGGCCGCAT TTTGTGGCAG 
GAGTTTTTCA ATAATCGCGA CTGGCCGGTG GCCTCTGCGG TGGCAACCGT GATGTTAGTG 
CTGCTGATTG CCCCGATACT CTGGTTCCAC AAACATCAAA ATAAAGATAT TGGGGGCGCG 
AGATGA
 
Protein sequence
MIPESTSGAA EPPIRSVGPV RALIQRFQMA HGRKLVIAMP YLWLFLLFML PFLIVFKISL 
AEMVRAVPPY TDLTTWLDGK LDISLNLGNY LLLLDDPLYI DAYLQSLQVA AVSTLCCLLI 
GYPLAWAIAH SKPSTRNILL LLVILPSWTS FLIRVYAWMG ILKNNGILNN FLIWTGIIDQ 
PLVILHTNLA VYIGVVYSYL PFMVLPIYTA LTRLDYSLVE AALDLGARPF KTFISVIIPL 
TKGGIVAGSM LVFIPAVGEF VIPELLGGPD SIMIGRILWQ EFFNNRDWPV ASAVATVMLV 
LLIAPILWFH KHQNKDIGGA R