Gene YpsIP31758_2601 details

Gene Information

• Locus tag: YpsIP31758_2601
• Symbol: cydC
• ID: 5387465
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 2957336
• End bp: 2959060
• Gene Length: 1725 bp
• Protein Length: 574 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640865590
• Product: cysteine/glutathione ABC transporter membrane/ATP-binding component
• Protein accession: YP_001401566
• Protein GI: 153949135
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4987] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components
• TIGRFAM ID: [TIGR02868] thiol reductant ABC exporter, CydC subunit

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 0.483201
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCGTAC TTCTTCCGTT TTTGGCGCTG TATCGCCGTC ATTGGTTCTT GATTTCTCTT 
GGTATCGTAT TGGCTATTGT GACATTGCTG GCCAGTATTG GCCTGTTGAC GTTATCGGGT 
TGGTTTCTTG CCGGAACCGC TATTGCGGGG CCAGCGGGGT TATATACGTT TAACTACCTG 
TTACCCGCCG CCGGGGTCCG AGGTTCAGCA ATTATCCGCA CCGCAGGCCG CTATGCTGAA 
CGGGTCGTCA GCCACGATGC CACGTTCCGG GTACTGACGC ATCTGCGGAT ATTTGCCTTC 
CAGAAGATCT TGCCTCTCTC ACCTGCCGGT ATTGCGCGCT TTCGTCAAAG TGAGTTGCTG 
AACCGCCTGG TTGCTGATGT CGATACCCTC GACCACCTCT ATCTCCGGGT AATATCACCG 
TTGGTAGCGG CCTTGGTGAT TATCGCTGCA GTCACTTTTG GTTTGAGCTA TCTGGATCTT 
AATCTGGCAT TGACACTTGG GGGAATACTG CTCGGCTTAT TGTTCTTGGT GCCCTTGATT 
TTCTATCGCG CCGGCAAGCC TATCGGCAGT GACCTTACGG ACTTGCGTGC GCGTTATCGT 
TCACAGCTCA CCTCTTGGTT ACAAGGGCAA GCTGAACTCT TGGTTTTTGG CGCATTACAG 
CGTTTTCGTG CTTCACTTGA AGAAATTGAA CAACATTGGA TGGCGCGTCA GAAACAACAG 
GCGTCGCTGG CGGGTTTAGC ACAAGCACTG ATGATTTTAG CCTCCGGCCT TACGGTTACA 
CTGATTATGT GGTTAGCTGC GGGGGGAATT GGCGAGGATA ACCAGCCTGG TGCATTTTTG 
GCCTTGTTTG TTTTTACGTC TTTAGCTTCG TTTGAAGCGC TGCTACCCGT TGCTGGTGCG 
TTCCAACATT TGGGGCAAGT CATCGCTTCA GCAACCCGAG TGGGTCAGCT AATGGAGCAA 
AAGCCTGAAG TGACGTTCCC TATCAGCGGT CCAGCACCAA CCTCACAGGT GGCGCTGGAA 
GTGACAGGGC TGAGTTTTAC TTACCCACAG CAGCCGTTAC CCGTTTTACA GAATATATCG 
CTGTCACTGG CCGCAGGAGA GCATATCGCG CTACTTGGCC GTACTGGTTG TGGTAAATCC 
ACACTGTTGC AATTGTTAAC ACGTGCCTGG GATGTCAATC AGGGTCACAT CATGCTGAAC 
GGGCAACCAC TAGCATGCTA TGACGAGGCG GCGTTGCGCC AGATGATGAC GGTGGTGAGT 
CAGCGTGTGC ATATTTTCAG CAGCACATTG CGTGAAAATC TGTTATTGGC CTGCCCCACC 
GCTTCCGATG AACAACTGAA AAAAGTCTTG GAACAAGTAG GGCTAACCAA TCTGCTGGAT 
AACAGCGAAG GGTTAAATGC CTGGATGGGG GATGGTGGCC GGCCACTATC CGGTGGTGAG 
CAACGCCGTT TGGGTATAGC CCGCGCATTA TTACACTCGG CTCCGTTGTG GTTACTTGAT 
GAACCGACTG AAGGGCTGGA TGCGGAGACT GAACAACAGA TTCTGGCGCT GTTACGTGAA 
CATTGTCAGC ATAAGAGCCT GATTATGGTC ACTCACCGCT TGTACGGCTT GGAATATATG 
GACCGTATCT GTGTAATGGA TGGCGGTAAA ATTGTTGAAC AAGGTGATCA CCACCAGTTG 
TTGCAAAACA AAGGACGCTA TTACCAATTC CATCAGCGGC ACTGA 

 

Protein sequence

MRVLLPFLAL YRRHWFLISL GIVLAIVTLL ASIGLLTLSG WFLAGTAIAG PAGLYTFNYL 
LPAAGVRGSA IIRTAGRYAE RVVSHDATFR VLTHLRIFAF QKILPLSPAG IARFRQSELL 
NRLVADVDTL DHLYLRVISP LVAALVIIAA VTFGLSYLDL NLALTLGGIL LGLLFLVPLI 
FYRAGKPIGS DLTDLRARYR SQLTSWLQGQ AELLVFGALQ RFRASLEEIE QHWMARQKQQ 
ASLAGLAQAL MILASGLTVT LIMWLAAGGI GEDNQPGAFL ALFVFTSLAS FEALLPVAGA 
FQHLGQVIAS ATRVGQLMEQ KPEVTFPISG PAPTSQVALE VTGLSFTYPQ QPLPVLQNIS 
LSLAAGEHIA LLGRTGCGKS TLLQLLTRAW DVNQGHIMLN GQPLACYDEA ALRQMMTVVS 
QRVHIFSSTL RENLLLACPT ASDEQLKKVL EQVGLTNLLD NSEGLNAWMG DGGRPLSGGE 
QRRLGIARAL LHSAPLWLLD EPTEGLDAET EQQILALLRE HCQHKSLIMV THRLYGLEYM 
DRICVMDGGK IVEQGDHHQL LQNKGRYYQF HQRH