| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2559 |
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| Symbol | ompF |
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| ID | 5386695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 2899536 |
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| End bp | 2900618 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640865548 |
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| Product | outer membrane protein F |
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| Protein accession | YP_001401524 |
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| Protein GI | 153947222 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000000000037634 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAGC GCAATATTCT TGCAGTAGTA ATCCCAGCTC TGTTAGCCGC TGGTGCAGCT
AATGCAGCAG AAATCTATAA CAAAGATGGC AACAAACTTG ACCTGTACGG TAAAGTTGAC
GCACGTCACT CTTTCTCCGA TAACAACAAA CAAGATGGCG ACAAGTCTTA CGTTCGTTTC
GGCTTCAAAG GTGAAACCCA AATTACTGAC CAACTGACCG GTTACGGCCA GTGGGAATAC
AACATTCAAG CAAACAACGC TGAAGATTCA GGCGCTCAAG ACGGCAACGC AACCCGTCTG
GGCTTTGCTG GTCTGAAATT TGCTGAATTC GGTTCATTCG ACTATGGCCG TAACTACGGC
GTAATCTATG ACGTTAACGC ATGGACTGAC ATGCTGCCAG TGTTCGGTGG TGATTCAATC
TCCAACTCTG ACAACTTCAT GACTGGCCGT TCTACTGGCC TGGCAACTTA CCGTAACAAC
AATTTCTTCG GTATGGTTGA CGGCCTGAAC TTTGCCCTGC AATACCAAGG CAAAAATGAC
CGTTCTGAAG TCAAAGAAGC TAACGGTGAC GGCTTCGGTA TCGGTTCTAC TTATGATCTC
GGTAATGGCA TTAACTTCGG TGCTGGTTTC TCTTCTTCAA ACCGTACTCT TGATCAAAAA
TATGGTTCTA CCGCTGAAGG CGACAAAGCT CAGGCATGGA ACGTTGGTGC TAAATACGAC
GCAAACAACG TATACCTGGC TGTAATGTAT GCTGAGACTC AGAACCTGAC TCCATACGGT
TTTTATGATT TCACCATCGC GAACAAGACT CGCGATATCG AAATCACCGC ACAGTATCAG
TTCGACTTTG GTCTGCGCCC ATCACTGGGT TATGTTCAAT CCAAAGGTAA GGATCTGAAC
AATGTTGATG CTAACCATGA TCTGGTGAAA TATGTTTCTG TTGGTACTTA CTACTACTTC
AACAAAAACA TGTCTACCTA TGTTGATTAC AAAATCAACC TGTTGGACAA AGACCTGTTC
ACAGAAGTTA ACCGAATCAT GACAGACGAC GTTGTTGCTG TTGGCTTGGT TTACCAGTTC
TAA
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| Protein sequence | MMKRNILAVV IPALLAAGAA NAAEIYNKDG NKLDLYGKVD ARHSFSDNNK QDGDKSYVRF
GFKGETQITD QLTGYGQWEY NIQANNAEDS GAQDGNATRL GFAGLKFAEF GSFDYGRNYG
VIYDVNAWTD MLPVFGGDSI SNSDNFMTGR STGLATYRNN NFFGMVDGLN FALQYQGKND
RSEVKEANGD GFGIGSTYDL GNGINFGAGF SSSNRTLDQK YGSTAEGDKA QAWNVGAKYD
ANNVYLAVMY AETQNLTPYG FYDFTIANKT RDIEITAQYQ FDFGLRPSLG YVQSKGKDLN
NVDANHDLVK YVSVGTYYYF NKNMSTYVDY KINLLDKDLF TEVNRIMTDD VVAVGLVYQF
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