| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2507 |
|---|
| Symbol | |
|---|
| ID | 5386975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 2839036 |
|---|
| End bp | 2840772 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640865497 |
|---|
| Product | OmpA domain-containing protein |
|---|
| Protein accession | YP_001401475 |
|---|
| Protein GI | 153949846 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 57 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGGT GGTGGCAACG TGGGTTGTGG CTCTGGGCGG GTTTGCTGGC GGTCATCTTG
TGTCTGGCAT TTCTGCCGCT CTCCCCGTGG GGGCGCTGGC TGATGCTGGC ATGGGTGGTG
CTGATTTGCA TGCTGGGCGG GTCGCGGGCA GGGCGGCAAG CGGCCGGTGC ATCCTCTGAT
CCGCTGTTCG CCGGGTTGGC AACTGAAAAC GGTCTTCTGC CTGAAAACAG TCGCTTACCG
GTGGTGTTGG TATGTGGTGA TGGTCTGGCG TCATGGTTTG GTCGCGAACG GTCACACCAG
AGTGCACAGG GCTGCTGGCT GCGGGTGGAT GATATCAGCA CCCTGCGGCA GTTTGCCCGA
CAACTGCTGT GGCAACGGCC GGAATGGGCC GCTCAGTTGG CGGTGATGAT GGTCGTGAAC
CCGCAGCAAC GCCGCGATGA GCGCCTGCTG GCCGCCGATC TGCAAGAGCT GCGCTGGCAA
CTGATGCAAC TGCGCCGCGA TAGCCGCCAT CCAGTTCCCT TGCTCCTGAG CAGCACGGTG
GCCACCTCGG TTGCCCGTGA TACGGTCTGG CTGTCACAGC AGCAGACACC GCCGCTGACA
CTCTGGTCAA CCGTCTCGAC GCCGGGCTCT CTGGCCGACT GGCAGCGTGC GGAAAGCCGT
GCCGTACAGG CTGAACGACT GAAACAGGCG GTGCTGTTCA GCAGCCAGCA TGACTGGCTG
AACGCACAGG TGCTGCCGGT ATTGCAGGCA CCCAATGCGG ATGTTGCCCC CCTTGCCCCG
CAACAGATTA TTCAACAGCA GGTTGCCAGT CTGGCCGATC CGGTGCCTGC CTCGCTGTGG
CAGCACTGGC TGGCGGCGCA TACCACGCTG ACACAGGTGG CGGGTTGGCA TCCACCGCCG
CCCGCCGCCC ATGACGCCTT ACCGCTGCCG GATTTTGTCT TTTCAGCGCT TCCTCTCGGC
AGCGGGGTGT CGTCACGCCG TCGGGTACTG CGCCATGGTG TCACCTTACT GACGTTGGCG
GCGATGGTGG CGTTGTGCAG CAGCGCCTGG CAGAACCGGC AACTGTTGCA CCGGGTGGCC
TTTGATATCC GTCAGTACCA CAGCGTGGCG ATGACGGATT ATTCCCCGAA AGCGCAGGCG
GTGGCGGTAT TACACCGTGA TGCGGGGCTG CTTGATGAAG GGTACCGCAA CGGTGAACCG
CTGCGTCTGG GCCTGGGGTT ATATCGGGGG GAGCGGCTGC GCCCGCCGCT GTTGGCGGCG
ATCAAAAGCT ACATCCCGCC GCCTCCTCCG CCTCCCGCGC CACCGGCGCC GAAAACCGTG
CGTCTCGACA GCCTGTCACT GTTCGATGTG GGTAAATTCA CGCTGAATGC GGGGTCCACC
AAAATGCTGG TTGATGCGCT GATGAATATC CGGGCGAAAC CCGGCTGGTT GATCGTGGTG
GCCGGGCATA CCGATATCAC CGGTGATGCG CAGGCCAACC ACATTCTGTC GCTTAAACGC
GCCGAAGCGT TACGCGACTG GATGCTGTCA ACCAGCGACG TCTCGCCGAC CTGCTTTGCG
GTGCAAGGCT ACGGGGCCAC ACGCCCCATC GCCGACAATG ATACTCCCGA CGGTCGGGCG
CTCAACCGCC GGGTCGAAAT CAGTCTGGTA CCACAGGCTG ATGCCTGTCA GGTGCCAGAG
GTAAAAACAG CGTCACAGGA TGAAAGTGAC GTATCAACGC AAGAAATGGA GAAGTAA
|
|---|
| Protein sequence | MSRWWQRGLW LWAGLLAVIL CLAFLPLSPW GRWLMLAWVV LICMLGGSRA GRQAAGASSD
PLFAGLATEN GLLPENSRLP VVLVCGDGLA SWFGRERSHQ SAQGCWLRVD DISTLRQFAR
QLLWQRPEWA AQLAVMMVVN PQQRRDERLL AADLQELRWQ LMQLRRDSRH PVPLLLSSTV
ATSVARDTVW LSQQQTPPLT LWSTVSTPGS LADWQRAESR AVQAERLKQA VLFSSQHDWL
NAQVLPVLQA PNADVAPLAP QQIIQQQVAS LADPVPASLW QHWLAAHTTL TQVAGWHPPP
PAAHDALPLP DFVFSALPLG SGVSSRRRVL RHGVTLLTLA AMVALCSSAW QNRQLLHRVA
FDIRQYHSVA MTDYSPKAQA VAVLHRDAGL LDEGYRNGEP LRLGLGLYRG ERLRPPLLAA
IKSYIPPPPP PPAPPAPKTV RLDSLSLFDV GKFTLNAGST KMLVDALMNI RAKPGWLIVV
AGHTDITGDA QANHILSLKR AEALRDWMLS TSDVSPTCFA VQGYGATRPI ADNDTPDGRA
LNRRVEISLV PQADACQVPE VKTASQDESD VSTQEMEK
|
|---|
| |