| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2504 |
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| Symbol | |
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| ID | 5387184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 2833254 |
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| End bp | 2835602 |
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| Gene Length | 2349 bp |
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| Protein Length | 782 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640865494 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_001401472 |
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| Protein GI | 153948683 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACCT TTCTCCCGAC TCTTCGGTTT GACCATAGCC ACCACAAACT GGTGGTCCGC
GACAGCACCG CCGCCGTTGA TGTGCTGGGC TTTGAAGGCC ATGAAAGCCT GAGCCAGCCG
TTCTGTTACG ACATCCAATT CACCAGCGCC GACAAGGCGA TTGACCCGGC CACCATGTTG
ATGCAGGACG CGTCACTGAC ATTGGCGGCC CCGGTGGCTG AAGCCTTTGG TGTGACGGTT
CAGCAGACCC AACGGGTGAT CCAAGGGGTG GTGACCGGGT TTAAACGTCT GTCGGCCTCG
AAAGAGGAAT GCCGCTACGA ACTGAGCCTG CAACCGCGCC TGGCCTTGCT GTCGCGCAGC
CATCAGAACG GGATATATCA GGACATGTCG GTGCCGCAGA TTGTGGAAAA AATTCTGCGT
GAGCGCCATG ATATGCGCGG TCAGGATTTT GTCTTCACCC TGGCCCGCGA GTACCCGCGC
CGCGAGCAGG TGATGCAGTA CGGCGAAGAT GACCTGACCT TTATCCGCCG CCTGCTGGCG
GAAGTGGGGA TCTGGTTTCG TTTTACCGCC GATCCCAAAC TCAATATTGA TGTGGTGGAG
TTTTACGACG ACCAGCGCTT TTACCCGTCA GGGCTGACGC TACAGGCAGT GCCCCCTTCG
GGCCTGCACG ACAGCGGGAC GGAGTCGGTC TGGGATTTGT CCAGTGCCCA TCAGGTGGTG
GAAAAATCGG TCAGTACCGG CGATTACAAC TACCGCACCG CCACTGCCGA CCTGACCGCC
GGGGCCGACA TCACGCGCGG CGATACCACC ACCTACGGCG AAGCCTATCA TTACGCCGAT
AACTATCTGA CCGCAGGCAG CGAAGGGCGC GAGCCGGAAA GTGAAAGTGG GGCCTTTTAT
GCCCGTCTGC GCCATGAACG TTACCTCAAT AATCAGGCGC GCTTCGCCGG GGTGGCCAAT
GCGGCGGCAC TGGCACCGGG TCAGGAACTG AACGTCACCG GCAACGACGT GCCAGCACAG
TTTGGTAAAG GGGTGATAAT CACCCGCATC ACCAGCCATG CCCGCCGCGA CCGCAGCTAT
GAAGTACATT TTGAAGCCAT TCCTTACTCC GAGGATTATT GCTTCCGTCC GGCGCTGATC
CGCAAGCCGA CCATGGCCGG GACCTTGCCG GCGCGGGTGA CCAGTACCAC TGCTAACGAC
ACTTATGGTC ATATCGACAA AGACGGGCGC TACCGTGTCA ACCTGATGTT CGACCGTGAC
AGTTGGGAGT CGGGTTACGA AAGCCTTTGG GTTCGTCAGG CCCGCCCGTA TGCGGGTGAC
ACCTACGGCC TGCACCTGCC GCTGCTGGCG GGCACCGAAG TGGCGATTGC GTTTGAAGAT
GGCAATCCGG ACCGGCCGTA TATTGCCTCT GTGTTGCACG ACTCGGCGCA CGGCGACCAT
GTCACCATCA GTAATTACAA ACGTAACGTA CTGCGTACTC CGTCGAATAA CAAACTGCGC
CTTGAAGATG AACGGGGTAA AGAGCACATC AAGCTCAGCA CCGAATACGG CGGCAAAAGC
CAGTTGAATC TGGGGCATCT GGTCGATAAC GAGAAACAGC CTCGGGGTGA GGGTTTTGAG
CTGCGCACCG ACAGTTTTGG TGCCTTGCGG GCAGAAAAAG GGATTTTCAT CAGCGCTGAC
GGCCAGGCGA AGGCACAGGG GCAGGTGCTG GAGATGCAAC CGGCTATCAG CCTGTTGAAA
AGTGCGCAGG AACAGATGGA GGCCATCTCC GCGGATGCAC AAACCGCCAC CGCCAGTCCG
GCCAACCTAC AGGTACAAAT CAGTCTGTTG CAGCAAAACC TCACTGAACT GAAACAAGCT
GTCCTGTTAC TGAGTGCGCC AAAGGGGATC GCGTTGAGCA GCGGGGAGCA TCTGCAAATG
AGTACCAGCG ATAACCTGAT TGCCACCGCA GGTAAAAATA CCGACGTCAG CGTCGCGAAA
AACTTCTTTA TCGGCGTAGG CAATACCCTA AGTATCTTCG TCAGAAAGCT GGGGATGAAA
CTAATAGCCA ATCAGGGGTC GATAACAGTC CAGGCCCAGA ATGATCTAAT GGAGTTATTG
GCGCGTAAAG CGATCACGAT CACCAGCACC GAGGATGAGA TAAAAATCAC CGCCAAGAAG
AGGATCACGC TGAATGCGGG AGGCAGTTAT ATCACGCTGG ATGAGAATCG GATCGAGTCA
GGAACGGCGG GGGAATATTT GACCAAAGCA GGGTATTACG GGCGGTTAGA TAAGGCCAAG
CTCCCAACTG AATTTCCAGC CTTAGCCGCT AAAACTGAAG ACCCCATTAA ACGTTGGCTA
TTCTCTTAA
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| Protein sequence | MNTFLPTLRF DHSHHKLVVR DSTAAVDVLG FEGHESLSQP FCYDIQFTSA DKAIDPATML
MQDASLTLAA PVAEAFGVTV QQTQRVIQGV VTGFKRLSAS KEECRYELSL QPRLALLSRS
HQNGIYQDMS VPQIVEKILR ERHDMRGQDF VFTLAREYPR REQVMQYGED DLTFIRRLLA
EVGIWFRFTA DPKLNIDVVE FYDDQRFYPS GLTLQAVPPS GLHDSGTESV WDLSSAHQVV
EKSVSTGDYN YRTATADLTA GADITRGDTT TYGEAYHYAD NYLTAGSEGR EPESESGAFY
ARLRHERYLN NQARFAGVAN AAALAPGQEL NVTGNDVPAQ FGKGVIITRI TSHARRDRSY
EVHFEAIPYS EDYCFRPALI RKPTMAGTLP ARVTSTTAND TYGHIDKDGR YRVNLMFDRD
SWESGYESLW VRQARPYAGD TYGLHLPLLA GTEVAIAFED GNPDRPYIAS VLHDSAHGDH
VTISNYKRNV LRTPSNNKLR LEDERGKEHI KLSTEYGGKS QLNLGHLVDN EKQPRGEGFE
LRTDSFGALR AEKGIFISAD GQAKAQGQVL EMQPAISLLK SAQEQMEAIS ADAQTATASP
ANLQVQISLL QQNLTELKQA VLLLSAPKGI ALSSGEHLQM STSDNLIATA GKNTDVSVAK
NFFIGVGNTL SIFVRKLGMK LIANQGSITV QAQNDLMELL ARKAITITST EDEIKITAKK
RITLNAGGSY ITLDENRIES GTAGEYLTKA GYYGRLDKAK LPTEFPALAA KTEDPIKRWL
FS
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