| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2401 |
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| Symbol | |
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| ID | 5384964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 2701633 |
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| End bp | 2702925 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640865391 |
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| Product | TRAP transporter, DctM subunit |
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| Protein accession | YP_001401370 |
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| Protein GI | 153949211 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.000000128119 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGCAT TTATTTTAGT TTTTACCCTG GCAATTCTAT TGGCTATTGG TGTCCCCGTT
GCCTATGCCG TGGGCCTCAG TGCCATTGCA GGCGCGTTTT GGATTGATTT GCCACTGGAA
GCCGTGATGA TCCAAATAAC CAGTGGGGTC AATAAATTTT CCCTACTGGC TATTCCCTTC
TTTATTCTGG CGGGTGCCAT TATGGCGGAG GGCGGTATTG CACGACGGCT GGTCAACTTT
GCCTATATCT TCGTGGGCTT TATCCGCGGT GGCCTGTCAT TGGTGAATAT TGTCGCCTCA
ACATTTTTTG GTGCTATTTC CGGCTCTTCG GTGGCAGATA CCGCCTCTAT CGGCTCAGTG
ATGATCCCTG AGATGGATAA AAAAGGCTAC CCTCGCGATT TTGCCGCTGC CGTGACCGCC
AGTGGTTCAG TACAGGCAAT ATTGACGCCA CCCAGCCATA ACTCGGTGAT CTATTCACTG
GCAACCGGTG GGACGGTCTC CATCTCCGCC CTGTTCATTG CGGGGATCGT TCCAGGCCTG
TTACTTAGCC TGACCTTGAT GCTCATGTGT GTCGGCTTCG CCTATAAGCG GGGTTATCCC
AAAGGTGAGC GGGTGCCATT CCGTCAGGCA CTTAAAATTT TTGTCGATAC GCTATGGGGG
CTGATGACGG TTGTTATCAT CATGGGCGGT ATCCTGTCAG GGGTGTTTAC CGCGACTGAG
TCCGCGGCTA TCGCCTGCTT ATGGTCATTC TTCGTCACCA TGTTTGTCTA CCGTGATTAT
AAGTGGTCCG AACTGCCCAA ACTGATGTAT CGGACGGTCA AAACCGTCAC TATTGTCATG
ATCCTGATAG GGTTTGCCGC CAGTTTCGGT GCCATCATGA CCTACATGCA ATTACCGGAA
CGTATCACTG ATTTCTTTAC CTCTATTTCT GATAATAAAT ACGTCATTCT GATGTGCATC
AACATCATGC TGCTGCTGAT TGGTACGCTG ATGGATATGG CACCGCTGAT TTTGATCCTC
ACACCGGTAT TAATGCCGGT AACCAATTCG TTGGGCATTG ACCCGGTCCA TTTCGGTATG
ATTATGTTGA TTAATCTGGG AATTGGCCTG ATTACGCCGC CAGTGGGATC GGTCTTATTC
GTTGCCAGTG CGGTGAGTAA ACAAAAGATA GAGCAAGTGG TAAAAGCCAT GTTGCCCTTC
TACGGTGCGT TATTCTTTGT GCTGATGCTG GTGACCTATA TTCCGGAAAT CTCTCTGTGG
TTGCCACGGA TGTTTGGAAT ATATAACGGT TAA
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| Protein sequence | MDAFILVFTL AILLAIGVPV AYAVGLSAIA GAFWIDLPLE AVMIQITSGV NKFSLLAIPF
FILAGAIMAE GGIARRLVNF AYIFVGFIRG GLSLVNIVAS TFFGAISGSS VADTASIGSV
MIPEMDKKGY PRDFAAAVTA SGSVQAILTP PSHNSVIYSL ATGGTVSISA LFIAGIVPGL
LLSLTLMLMC VGFAYKRGYP KGERVPFRQA LKIFVDTLWG LMTVVIIMGG ILSGVFTATE
SAAIACLWSF FVTMFVYRDY KWSELPKLMY RTVKTVTIVM ILIGFAASFG AIMTYMQLPE
RITDFFTSIS DNKYVILMCI NIMLLLIGTL MDMAPLILIL TPVLMPVTNS LGIDPVHFGM
IMLINLGIGL ITPPVGSVLF VASAVSKQKI EQVVKAMLPF YGALFFVLML VTYIPEISLW
LPRMFGIYNG
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