Gene YpsIP31758_2399 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_2399 
Symbol 
ID5387874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand+ 
Start bp2699991 
End bp2700983 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content44% 
IMG OID640865389 
ProductTRAP transporter solute receptor DctP family protein 
Protein accessionYP_001401368 
Protein GI153949763 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0000284649 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGATTGC CAACGTCTTT CCCTACATTA TGTTTAACCG CCTCGGCGTT GTTACTGAGC 
CAAGTGCTAT TTAGCCAATC CGCAACTGCC CAACAAATTA AAGCAGCCGA TGTTCATCCT 
AAAGATTATC CCAATGTCGT GGCGATGAAA GATATGGGCG AAAAACTAAA AGTCGCGACT 
GATGGCCGTC TGGAGATGAA AACATTTCCT GGTGGAGTGT TAGGTGATGA GAAGCAAATG 
ATAGAACAGG CGCAAATGGG CGCAATCGAT ATTATTCGTG TTTCTATGAC ACCCGTTGCC 
TCTATTTTAC CGGAGATTAA TGTCTTTACC CTTCCCTATA TCTTCCGTGA CGAAGATCAT 
TTACATAAGG TCCTTGATGG TAAAATTGGT CAGGAAATAG GCGGTAAAAT CACCGATAAC 
AAAAATTCAA AATTGGTGTT CTTAGGTTGG ATGGATGGCG GTACCCGTCA CCTGATTACT 
AAACAACCAG TGATTAAACC GGAAGATCTC AGCGGGATGA AAATCCGTGT TCAAGGCAGC 
CCGATTGCGT TAGCAACGCT AAAATCAATG GGGGCCAATG CCCTGAGTAT GGGCGTCAGT 
GAAGTGTTCA GCGGTATGCA AACCGGGGTC ATTGATGGCA CCGAAAATAA CCAGCCTACA 
TTTGTAGCCC ATAATTACCT GCCTGTTGTC AAAAATTATA CCCTGAGCGG CCATTTCATT 
ATTCCCGAAG TATTCCTGTA TTCGAAAGCC AAGTGGGACA AATTATCTGC CGAAGATCAG 
CAAACCATTC TTAAATTAGC AAAAGAAGCA CAAGCTGAGC AACGCGTATT ATGGACAGCC 
TATGAGCAAC AAGCTCATGA GAAAATGAAG GCCGGCGGTG TGCAGTATCA TGAGATTGAT 
CGTGATTATT ATTATAAAGC CACTCAGCCC GTACGCGATG AGTTCGGCAA AGGTCATGAG 
GACTTGATTA AACAGATTGG TGACGTCCAA TAA
 
Protein sequence
MRLPTSFPTL CLTASALLLS QVLFSQSATA QQIKAADVHP KDYPNVVAMK DMGEKLKVAT 
DGRLEMKTFP GGVLGDEKQM IEQAQMGAID IIRVSMTPVA SILPEINVFT LPYIFRDEDH 
LHKVLDGKIG QEIGGKITDN KNSKLVFLGW MDGGTRHLIT KQPVIKPEDL SGMKIRVQGS 
PIALATLKSM GANALSMGVS EVFSGMQTGV IDGTENNQPT FVAHNYLPVV KNYTLSGHFI 
IPEVFLYSKA KWDKLSAEDQ QTILKLAKEA QAEQRVLWTA YEQQAHEKMK AGGVQYHEID 
RDYYYKATQP VRDEFGKGHE DLIKQIGDVQ