Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_2290 |
Symbol | fliF |
ID | 5385420 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 2595624 |
End bp | 2597336 |
Gene Length | 1713 bp |
Protein Length | 570 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640865277 |
Product | flagellar MS-ring protein |
Protein accession | YP_001401259 |
Protein GI | 153947408 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGCCT CGATAACTGG CGGTGAAAAT CGTGAGAACA CGTTTACGAT GACACTGGCA CGCCTACGCG CGAACCCCAA AATCCCCCTG CTGATTGCTG CGGCTGCTGC TATCGCTATC ATTGTCGCCT TGATGCTCTG GGCTAAAAGC CCGGATTATC GCGTCCTTTA CAGCAATCTC AGTGATCGTG ACGGCGGTGA TATCGTCACC CAACTGACAC AACTGAACAT CCCTTATCGT TTCGCTGATA ATGGTGGCGC ATTGCTGATC CCCGCTGAGA AAGTGCATGA AACCCGCTTG CGGTTGGCAC AACAGGGTTT ACCGAAAGGT GGCGCTGTGG GTTTTGAATT ACTGGATCAG GAAAAATTCG GCATCAGTCA ATTCAGTGAG CAGATAAACT ACCAGCGGGC ATTGGAAGGT GAATTATCCC GGACCATCGG CACACTCGGG CCAGTATTGA ATGTACGAGT GCATTTGGCG ATGCCCAAAC CCTCGTTATT TGTCCGTGAA CAAAAATCCC CGACCGCCTC GGTCACCCTC GCCTTACAAC CAGGTCGCGC ATTAGATGAT GGCCAGATCA ATGCCATCGT TTATATGGTT TCCAGTAGCG TGGCAGGCTT GCCGCCGGGT AACGTCACCG TGGTTGACCA AACGGGCCGT CTGTTGACGC AATCAGACAG TGCAGGCCGC GATTTAAATG CTTCGCAATT GAAATTCACC AGCGAAGTCG AAAACCGTTA TCAGCGCCGT ATTGAAAATA TTCTGGCACC GATGGTCGGC AACGGTAATG TTCATGCTCA GGTGACTGCG CAGGTTGATT TTGCCAGCCG TGAACAAACG GATGAAGAGT ACAAACCGAA TCAGGCCGCC AACCAAGGTG CTGTCCGCTC TCAACAGGTG AGTACCAGCG AACAACTGGG CGGAACCAAC GTAGGCGGTG TGCCGGGGGC GTTATCGAAC CAACCGCCAG TGGCACCGAT AGCCCCGATT GAAATCCCAC AACCGGCAGG GGCCGCCGCC AATAATGCCG CTCCGGCTAA TACGGCGGCA ACGGCTAACG CAAATACGAC AGCAACCGCC GCGAAAGCCA GTTCCAGCAA TAGTCGCCAT GACCAAACGA CAAACTTCGA AGTTGACCGC ACCATCCGCC ATACCCAGCA GCAAGCAGGT ATGGTGCAGC GTTTATCCGT CGCGGTGGTG GTGAACTACA CCAGCGATAA AGCCGGTAAA CCGATTGCAC TGAGTAAAGA TCAGTTGGCG CAGGTGGAGT CACTGACCCG TGAGGCGATG GGTTTCTCTA CCGTCCGTGG TGACACACTG AACGTAGTCA ATACCCCCTT CACAGCCAGT GACGATACCC GTGGCAGCAG CCTACCGTTT TGGCAACAGC AATCCTTCTT TGATCAGTTG CTGAATGCCG GCCGCTACCT GCTGATCCTA CTGGTTGCCT GGATTTTGTG GCGCAAACTA CTTCGCCCAA TGCTCGCCAA AAAACAGGTT GCAGATAAAG CGGCCGCCTC GGTCAATAAC ATCGTTCAAA CCGCACAAGC GGCTGAGACA GTAAAACAAA GTAAAGAAGA GCTGGCCCTG CGTAAGAAGA ATCAGCAGCG GGTGAGTGCT GAAGTTCAGG CCCAGCGTAT ACGCGAACTG GCGGATAAAG ACCCACGTGT TGTGGCGTTG GTGATCCGTC AATGGATGAG TAATGACCAA TGA
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Protein sequence | MNASITGGEN RENTFTMTLA RLRANPKIPL LIAAAAAIAI IVALMLWAKS PDYRVLYSNL SDRDGGDIVT QLTQLNIPYR FADNGGALLI PAEKVHETRL RLAQQGLPKG GAVGFELLDQ EKFGISQFSE QINYQRALEG ELSRTIGTLG PVLNVRVHLA MPKPSLFVRE QKSPTASVTL ALQPGRALDD GQINAIVYMV SSSVAGLPPG NVTVVDQTGR LLTQSDSAGR DLNASQLKFT SEVENRYQRR IENILAPMVG NGNVHAQVTA QVDFASREQT DEEYKPNQAA NQGAVRSQQV STSEQLGGTN VGGVPGALSN QPPVAPIAPI EIPQPAGAAA NNAAPANTAA TANANTTATA AKASSSNSRH DQTTNFEVDR TIRHTQQQAG MVQRLSVAVV VNYTSDKAGK PIALSKDQLA QVESLTREAM GFSTVRGDTL NVVNTPFTAS DDTRGSSLPF WQQQSFFDQL LNAGRYLLIL LVAWILWRKL LRPMLAKKQV ADKAAASVNN IVQTAQAAET VKQSKEELAL RKKNQQRVSA EVQAQRIREL ADKDPRVVAL VIRQWMSNDQ
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