Gene YpsIP31758_2268 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_2268 
SymbolputA 
ID5384949 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp2573823 
End bp2577794 
Gene Length3972 bp 
Protein Length1323 aa 
Translation table11 
GC content53% 
IMG OID640865255 
Producttrifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001401237 
Protein GI153948941 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGAGTA CCACAATGGG CGTAAAGCTT GATGAAGCAA CACGAGACCG CATCAAGAGT 
GCAGCACAAC GTATTGACCG CACACCACAC TGGCTCATTA AACAGGCTAT TTTCAACTAC
TTAGAAAAAC TGGAAAGTAA CAGTGAATTG CCAGAACTGG CAACAACAAG TTCACTCTCT
CTGCAAGACA CAGAAGATGC TATACCGCAA CTCACTGAAA ACACTCATCA GCCATTCTTG
GATTTTGCGG AACACGTGCT CCCGCAGTCG GTTACCCGTG CCGCCATTAC TGCGGCTTAT
CGTCGCCCAG AAACCGAAGC GATCCCCATG TTATTGGAAC AAGCACGCCT ACCCGCAGAT
TTAGCGCAAG CAACACATAA ACTGGCCTAT TCCATTGCTG AAAAACTGCG TAATCAAAAA
AGTGCCCATG GCCGCGCGGG CATGGTACAG GGATTGCTGC AAGAGTTCTC ACTCTCTTCA
CAGGAAGGCG TGGCATTGAT GTGTCTGGCT GAAGCCCTAC TACGTATTCC TGACAAGCCA
ACCCGCGATG CACTGATCCG CGATAAAATT AGCAACGGCA ACTGGCATTC GCATCTGGGA
CGTAGCCCGT CAATGTTTGT CAATGCAGCC ACTTGGGGCC TGCTATTTAC TGGCCGCCTA
GTCTCTACCC ATAACGAAGC CAAACTCTCC GGCTCACTGA ACCGAATTAT CGGTAAAGGG
GGTGAGCCGT TGATTCGTAA AGGCGTCGAT ATGGCGATGC GCTTGATGGG CGAGCAATTC
GTCACCGGTG AAACCATTTC GGAAGCATTG GCAAATGCCC GTAAATTAGA AGATAAAGGG
TTCCGCTACT CTTACGATAT GCTGGGCGAA GCGGCATTAA CTGAAGCAGA TGCACAGGCT
TACCTACTCT CTTACCAACA GGCAATTCAT GCCATTGGTA AAGCCTCAAA TGGCCGTGGT
ATTTACGAAG GCCCGGGGAT TTCAATCAAA CTTTCCGCCC TACACCCCCG TTATAGCCGT
GCGCAATATG AGCGAGTGAT GGACGAGTTA TACCCGCGTC TGTTATCGCT AACATTACAG
GCCCGTCAGT ATGATATCGG TATCAATATT GATGCCGAGG AGGCTGATCG TCTGGAAATC
TCTCTCGACC TGTTGGAGAG GCTGTGCTTC GAACCCCAAT TGGCAGGTTG GAATGGCATT
GGTTTTGTTA TTCAGGCATA CCAAAAGCGT TGTCCGTCCA CTATTGATGC CGTGATTGAT
ATGGCACAAC GTAGCCGCCG CCGTCTGATG ATTCGCCTCG TCAAAGGGGC GTATTGGGAC
AGCGAAATTA AACGTGCTCA AATTGACGGG TTGGAAGGAT ACCCAGTTTA TACTCGTAAG
GTTTATACCG ATGTGTCCTA TCTGGCCTGT GCCCGCAAAT TATTGGCTGT TCCAAACCTG
ATCTATCCGC AATTTGCGAC GCATAATGCG CATACTCTGT CAGCGATTTA CCACCTTGCC
GGGCAAAATT ACTACCCCGG CCAGTATGAG TTCCAATGCC TACACGGCAT GGGGGAGCCA
CTGTATGAGC AAGTGGTCGG GAAAGTTGCC GAGGGTAAGC TCAACCGCCC ATGCCGTATT
TATGCTCCGG TCGGTACCCA TGAAACATTG CTGGCTTACC TTGTGCGCCG TTTGTTGGAA
AACGGTGCCA ATACCTCGTT TGTCAATCGT ATCGCTGATG CCACATTACC CCTTGATGAA
CTGGTTGCGG ACCCGGTCAG TGCGGTAGAA GCCATGGCGG CGGCTGAAGG TCAACTTGGT
TTACCTCATC CGCGTATCCC CTTACCACGT GAGCTGTTTG GTAAAGATCG CGCCAACTCC
AGCGGGGTGG ATCTTGCCAA CGAACACCGC CTTGCGTCGC TCTCCAGCGC GTTGCTGGCC
AGTGCCAGCC AGGTATGGCG TGCGGAGCCC GTCATTGATG CAGAGCAGGA CAACGGTGAC
GCGCTACCGG TTATCAACCC GGCAGAACCT GCCGATGTGG TTGGCTATGT CCGCGAGGCA
ACCGAAGGTG AAGTTAGCCG TGCATTGGAT GCTGCCGCCC GTGCTGGCGC TATCTGGTTT
GCCACCCCCC CGGCTGAACG GGCTGCTATC TTAATCCGCG CCGCTGAGTT GATGGAAAAT
CAGATGCAAA CGCTGATGGG AATACTGGTG CGTGAGGCGG GTAAAACCTT CAGTAATGCC
ATCGCCGAAG TCCGTGAAGC CGTGGACTTC TTGCATTATT ACGCCGGTAT AGTCAGGGAT
AACTTCGCCA ATGATAGCCA TCGCCCGCTC GGCCCGGTTG TTTGTATCAG TCCGTGGAAC
TTCCCACTGG CAATCTTTAC CGGTCAGGTT GCCGCCGCGT TAGCAGCAGG CAACAGTGTT
TTGGCAAAAC CAGCGGAACA AACACCACTC ATTGCCGCAC AGGCCGTGCG TATTCTGCTG
GACGCAGGCA TCCCACAGGG TGTTCTGCAA TTGCTACCTG GCCGCGGTGA CAGTGTTGGC
GCGCTACTGG TTAATGATGC CCGTGTGCGT GCAGTGATGT TTACCGGTTC TACCGAAGTA
GCCACTATTT TACAACGTAG TATCGCAGGC CGTCTTGATC CACAGGGGCG TCCAACACCG
CTGATCGCGG AAACCGGTGG CCTGAATGCG ATGATTGTTG ACTCTTCGGC ACTGACTGAA
CAAGTTGTGA CCGATGTTGT CGCCTCTGCC TTTGACAGTG CAGGCCAGCG TTGTTCTGCC
CTGCGTATTC TCTGCATTCA GGATGATGTC GCTGAACATA CGCTGCAAAT GTTGCGTGGT
GCCATGGCGG AATGCCGGAT GGGCAATCCA GAACGCCTGT CCACGGATAT TGGTCCCGTT
ATCGACGCCG AAGCGAAAAC TGGCATTGAG CGCCATATCC AAGCGATGCG AGCCAAAGGG
CGTAAAGTTT ATCAGGCAGC CCGTACCAAC AGCTTGGATG AGAAAGAGTG GCAACGTGGA
ACATTTATCA AACCGACCTT GATTGAATTG GACAGTTTTG ATGAGCTGCA AAAAGAAGTT
TTTGGCCCAG TGCTACATGT TGTACGCTTC CAGCGTCAGC ATCTTAATGA GTTAGTCGAT
CAAATTAATG CATCTGGCTA TGGCTTAACC TTGGGCATCC ACACCCGTAT TGATGAAACC
ATCGCCCGTG TCACTGAAAA AGCAAAAGTA GGCAACCTCT ACGTTAACCG TAATATGGTC
GGTGCCGTTG TCGGTGTACA ACCTTTTGGT GGCGAGGGGT TATCAGGTAC CGGTCCCAAA
GCTGGCGGCC CATTGTATTT GTATCGCCTG CTGAGTAGCC GCCCAGACGA CGCACTGGCC
AATACCCTGG CGCATCAGGA TGGCGAACAG CAACAAAATG TTGCAGGCCG TGAAGCGCTG
CTGACCGCTC ACCGCGCGTT CACTCAATGG GCCACGGAAC AACAACATGA TTCGCTGGCC
ACTCTCTGCC AACGCTATGC CTCTCTGGCA CAAGGTGGAA CCGTGCGGTT ATTGCCAGGC
CCGACCGGTG AGCGCAATAC CTATGCCCTG CTGCCTCGTG AGCGAGTCCT TTGTCTTGCC
GATACCGAAA GCGATACTCT TACGCAGTTG GCTGCGGTGT TGGCGACCGG GAGCCAGGTT
CTATGGCCGG AGAATGACGT ACAGAAAGCA CTGTTGCCTC AATTGCCTAC TGAAGTGCAA
TCGCGGATCA CCCTTACCCA CGATTGGCAA ACCGCTAACA TCACCTTCGA TGCCGTTATC
TATCACGGCG ATGCGGATCA ACTACGCACG CTATGTGAGC AGGTTGCGCA AATTGATGGC
CCCATTGTCT CTGTACAAGG CTTCGCTCGT GGTGAAACCA ATATCCTGCT GGAACGCTTA
TTAATTGAGC ATTCATTGAG TGTCAATACA GCTGCCGCTG GTGGCAACGC CAGTCTGATG
ACTATCGGCT AG
 
Protein sequence
MASTTMGVKL DEATRDRIKS AAQRIDRTPH WLIKQAIFNY LEKLESNSEL PELATTSSLS 
LQDTEDAIPQ LTENTHQPFL DFAEHVLPQS VTRAAITAAY RRPETEAIPM LLEQARLPAD
LAQATHKLAY SIAEKLRNQK SAHGRAGMVQ GLLQEFSLSS QEGVALMCLA EALLRIPDKP
TRDALIRDKI SNGNWHSHLG RSPSMFVNAA TWGLLFTGRL VSTHNEAKLS GSLNRIIGKG
GEPLIRKGVD MAMRLMGEQF VTGETISEAL ANARKLEDKG FRYSYDMLGE AALTEADAQA
YLLSYQQAIH AIGKASNGRG IYEGPGISIK LSALHPRYSR AQYERVMDEL YPRLLSLTLQ
ARQYDIGINI DAEEADRLEI SLDLLERLCF EPQLAGWNGI GFVIQAYQKR CPSTIDAVID
MAQRSRRRLM IRLVKGAYWD SEIKRAQIDG LEGYPVYTRK VYTDVSYLAC ARKLLAVPNL
IYPQFATHNA HTLSAIYHLA GQNYYPGQYE FQCLHGMGEP LYEQVVGKVA EGKLNRPCRI
YAPVGTHETL LAYLVRRLLE NGANTSFVNR IADATLPLDE LVADPVSAVE AMAAAEGQLG
LPHPRIPLPR ELFGKDRANS SGVDLANEHR LASLSSALLA SASQVWRAEP VIDAEQDNGD
ALPVINPAEP ADVVGYVREA TEGEVSRALD AAARAGAIWF ATPPAERAAI LIRAAELMEN
QMQTLMGILV REAGKTFSNA IAEVREAVDF LHYYAGIVRD NFANDSHRPL GPVVCISPWN
FPLAIFTGQV AAALAAGNSV LAKPAEQTPL IAAQAVRILL DAGIPQGVLQ LLPGRGDSVG
ALLVNDARVR AVMFTGSTEV ATILQRSIAG RLDPQGRPTP LIAETGGLNA MIVDSSALTE
QVVTDVVASA FDSAGQRCSA LRILCIQDDV AEHTLQMLRG AMAECRMGNP ERLSTDIGPV
IDAEAKTGIE RHIQAMRAKG RKVYQAARTN SLDEKEWQRG TFIKPTLIEL DSFDELQKEV
FGPVLHVVRF QRQHLNELVD QINASGYGLT LGIHTRIDET IARVTEKAKV GNLYVNRNMV
GAVVGVQPFG GEGLSGTGPK AGGPLYLYRL LSSRPDDALA NTLAHQDGEQ QQNVAGREAL
LTAHRAFTQW ATEQQHDSLA TLCQRYASLA QGGTVRLLPG PTGERNTYAL LPRERVLCLA
DTESDTLTQL AAVLATGSQV LWPENDVQKA LLPQLPTEVQ SRITLTHDWQ TANITFDAVI
YHGDADQLRT LCEQVAQIDG PIVSVQGFAR GETNILLERL LIEHSLSVNT AAAGGNASLM
TIG