| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2142 |
|---|
| Symbol | |
|---|
| ID | 5384650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 2464149 |
|---|
| End bp | 2465789 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640865128 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001401115 |
|---|
| Protein GI | 153950075 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATC AATCAGTTTC TCGTACAGGT ACGGAAGTTA AGGAGTCCTG GGTGCCGATG
ATTACCATCG CGCTGGCCCA GATCCTGATG TCATTCAACG TGGCCTCCCT ACCTGTTGCG
TTGGGCGGGA TGGTAAAGAG CTTTAATGTG CCACCAACCA CTATTGCCAC GGCGATAGTC
ATGTACTCAT TGTCGGTTGC AGGCTTTGTG ATGTTGGGTG CCAAACTCAA CCAACGCTTT
GGGCCATTGA TAGTATTCCG CTGTACAGTT CTGTTATTCG GCCTGGCTCA GACCATGATG
ACATTCAGCC CGAATGTCAC TGTAATGATC GGTGCGCAGG CACTGAGTGG TCTGGCAGGT
GCGGCATTGG TACCGGCACT GGTGGCGTTA ATTGCTGAAA ACTACCGTGG GCCTCAACAG
GCCACCGCAC TGGGGGCATT AGGTTCTGCT CGCGCAGGGG CGGGTGTTGC TGCGTTCCTG
ATCGGCGGTA TTTTGGGAAC CCATATCGGC TGGCGTCCAG CGTTCGGTAT TTTGATTGTG
TTGTCTGTTA TCGTTTTTGT ACTGAGTTTC CGTCTGAAAG CAGATAAAGG CCGCCCAGAA
GTGGGTATTG ATGTTATCGG TGTCGTTTTA GCTGCATCTG CGATTATTTT GTTGTCGTTC
GGCTTTAATA ACCTGAACCG TTGGGGCTTT GGTCTGGTTC GTGACGGCGC GCCGTTTGAC
CTGCTCGGTT TCTCACCAGC GCCGTTTATG ATCGTGTTGG GTATCGTCTT GGGTCAGGCA
TTTGTGGTCT GGACCCGCCG CCGTCAGGAG CAAGGTAAAA CGCCATTACT GGCGCTGGAC
GTGATTACAT CACCCAGTGA GCGGGCGGCG GTATTTGCCA TGTTTGCGGT GGTTGCGCTG
GAAGCCATGC TGAACTTTTC TGTTCCGCTG TATATACAAA TCGTGCAGGG CAGTTCGCCG
ATGGCAACAG CTATCGCTAT GATGCCGTTT AACCTATCGG TATTCTTCTC TGCGATGTTG
ATTGTACGTT TCTACAAGAA ACTGACTCCG CGTAAAATTG GTCGTTACGG TTTCATCACT
TGTACTTTGG CGCTGTTGTG GCTGGCATTC GTGGTACGTA ATAACTGGAG TGAGTGGTCG
GTCTTGATTG GTTTGGTGGT GTTCGGTATC GGACAAGGCT CACTCGTCAC CTTGCTGTTC
AACGTACTGG TCAGTGCATC ACCAAAAGAA TTGGCAGGCG ATGTGGGTTC TTTACGTGGT
ACGACCAACA ACCTGGCAAG CGCCATCGGT ACAGCGGTTG CAGGTGCCTT GCTGGTGGGC
TTGTTAAGTG CCAACGTGAT GCGCGGTGTC GCTGAAACGC CGATTCTGAC GGATGAGATC
CAAGCTCAGG TCAATATGGA TAGCATCAAC TTCGTCAGTA ATGATCGCCT GAACAGTGTA
TTGGCTCAAA CCTCCGCGAC CCAAGAACAG GTTGCCGAAG CGGTGCGGGT GAATGAAGAA
GCACGGTTAC GTGCGCTGAA ATTCGGTTTG CTGGTTATGG CGCTGCTATC GCTGTTGGCT
ATCTTCCCTG CTGGCCGCTT ACCTGACTAT CTGCCGGGTG AACTGCCTGC TGATAATCTG
GATAAAAAAG CCAGCAAGTA A
|
|---|
| Protein sequence | MANQSVSRTG TEVKESWVPM ITIALAQILM SFNVASLPVA LGGMVKSFNV PPTTIATAIV
MYSLSVAGFV MLGAKLNQRF GPLIVFRCTV LLFGLAQTMM TFSPNVTVMI GAQALSGLAG
AALVPALVAL IAENYRGPQQ ATALGALGSA RAGAGVAAFL IGGILGTHIG WRPAFGILIV
LSVIVFVLSF RLKADKGRPE VGIDVIGVVL AASAIILLSF GFNNLNRWGF GLVRDGAPFD
LLGFSPAPFM IVLGIVLGQA FVVWTRRRQE QGKTPLLALD VITSPSERAA VFAMFAVVAL
EAMLNFSVPL YIQIVQGSSP MATAIAMMPF NLSVFFSAML IVRFYKKLTP RKIGRYGFIT
CTLALLWLAF VVRNNWSEWS VLIGLVVFGI GQGSLVTLLF NVLVSASPKE LAGDVGSLRG
TTNNLASAIG TAVAGALLVG LLSANVMRGV AETPILTDEI QAQVNMDSIN FVSNDRLNSV
LAQTSATQEQ VAEAVRVNEE ARLRALKFGL LVMALLSLLA IFPAGRLPDY LPGELPADNL
DKKASK
|
|---|
| |