| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2130 |
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| Symbol | hmsF |
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| ID | 5386159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 2447619 |
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| End bp | 2449640 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640865116 |
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| Product | outer membrane N-deacetylase |
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| Protein accession | YP_001401103 |
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| Protein GI | 153950323 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAAGC TATTAATTTT TATCAAATCG CTCATTGTTG GGATGATGAT CGTGTCCACT
ATGGGGTGTG CGGAGAAGCC AACGTTCGTT CCGCCTGCAC AACGTGCATT GCCGCAAAGT
GAAAGACCGT GGCAAAAGAA TACATTTGTT GTGATTGCTT ATCATGACGT TGAAGACGAT
TCAGCCGATC AACGCTATCT GTCGGTAAGA AGCAGCGCAT TAAATGAGCA GTTCGTGTGG
TTGCGTGATA ACGGTTACCA CGTGGTTTCT GTTGATCAAA TTTTGGCAGC CCGTAATGGT
GGCCCTACAT TGCCGGATAA GGCGGTGCTC CTCACCTTTG ACGATGGTTA CAGCAGTTTT
TATCGGCGCG TTTATCCCTT ACTGAAAGCA TACAAATGGA GTGCCGTATT AGCGCCAGTG
GGCACTTGGA TTGATACCGC CACCGATAAA AAAGTGGATT TCGGTGGCTT GAGCACTGAT
CGGGATCGTT TTGCCACCTG GAAGCAGATT ACTGAAATGT CTAAATCAGG GTTGGTTGAA
ATCGGGGCGC ATACTTACGC TTCTCACTAT GGTGTGATTG CTAACCCACA GGGGAATACC
GAACCGGCGG CGGCCAATCT GCAATATGAT CCCAAAACAA AACAGTATGA AACTGTTGAA
GCCTTTAAGC AGCGAATGGA GAAAGACGTT GCGTTGATAA CTCAGCGTAT TGTCCAGGCA
ACAGGGAAAC AACCACGGGT TTGGGTTTGG CCATACGGTG CGCCGAATGG TACGGTGCTA
AATATTTTAC GCCAGCATGG TTATCAACTC GCCATGACCC TAGATCCTGG TGTGGCTAAT
ATTAATGACT TGATGAATAT ACCGCGCATT TTAATCAGTA ATAATCCGTC ACTGAAGGAC
TTTGCCCTCA CGGTTACCAG CGTGCAGGAA AAAAATATCA TGCGGGTGGC GCATGTTGAT
TTGGATTATC TCTACGATCC AGACCCGGCT CAGGAAAAAG AGAATCTTGA TAAGTTGGTT
CAGCGAATTT CTGACCTACG TGTCACTCAC GTTTTCCTGC AAGCATTTTC TGATCCGAAG
GGGGATGGCA ACATTCGCCA GGTTTACTTC CCGAACCGTT GGATCCCGAT GCGTCAGGAT
TTGTTTAACC GGGTGGTATG GCAATTGGCT TCACGGCCTG ATGTTGAAGT CTATGCCTGG
ATGCCGGTAT TGGCGTTTGA TATGGACCCG TCTTTACCTC GGATCACGCG TATTGACCCT
AAAACCGGTA AAACGAGTAT CGACCCAGAT CAATATCGCC GTTTGTCACC TTTTAACCCT
GAAGTAAGAC AGCGCATTAT TGATATCTAT CGTGATATGG CCTATAGCGC GCCGATTGAC
GGAATTATCT ATCACGATGA TGCGGTGATG TCTGATTTTG AAGATGCTTC CCCCGATGCT
ATCCGGGCCT ATGAAAAAGC GGGCTTCCCT GGTTCGATTA CCACGATACG CCAAGATCCA
GAGATGATGC AGCGGTGGAC TCGTTACAAG AGTAAGTATC TGATTGATTT TACTAATGAG
TTGACCCGCG AAGTCCGTGA TATCCGTGGC CCACAGGTAA AATCGGCGCG TAATATTTTC
GCTATGCCTA TTTTAGAACC AGAAAGCGAA GCATGGTTTG CACAGAATCT TGATGATTTC
CTCGCTAACT ATGATTGGGT CGCACCAATG GCCATGCCGT TAATGGAGAA AGTGCCGCTA
TCTGAATCTA ATGAATGGTT AGCGGAGCTA GTCAATAAAG TTGCGCAACG CCCCGGTGCT
TTGGAGAAAA CCGTGTTTGA ACTGCAATCT AAGGACTGGA CCCAACCTGA GGGCAATAAC
GCCATCAGCG GCCCAATACT GGCGGGATGG ATGCGCCAGT TGCAGTTAAG TGGTGCGCAA
AGTTTTGGTT ACTACCCGGA TAACTTTATT ACTGGCGAAC CACCGCTAAA AGATGTCCGC
CCTGTGCTGT CTTCTGCCTG GTACCCTTTA TATGATCGAT AG
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| Protein sequence | MAKLLIFIKS LIVGMMIVST MGCAEKPTFV PPAQRALPQS ERPWQKNTFV VIAYHDVEDD
SADQRYLSVR SSALNEQFVW LRDNGYHVVS VDQILAARNG GPTLPDKAVL LTFDDGYSSF
YRRVYPLLKA YKWSAVLAPV GTWIDTATDK KVDFGGLSTD RDRFATWKQI TEMSKSGLVE
IGAHTYASHY GVIANPQGNT EPAAANLQYD PKTKQYETVE AFKQRMEKDV ALITQRIVQA
TGKQPRVWVW PYGAPNGTVL NILRQHGYQL AMTLDPGVAN INDLMNIPRI LISNNPSLKD
FALTVTSVQE KNIMRVAHVD LDYLYDPDPA QEKENLDKLV QRISDLRVTH VFLQAFSDPK
GDGNIRQVYF PNRWIPMRQD LFNRVVWQLA SRPDVEVYAW MPVLAFDMDP SLPRITRIDP
KTGKTSIDPD QYRRLSPFNP EVRQRIIDIY RDMAYSAPID GIIYHDDAVM SDFEDASPDA
IRAYEKAGFP GSITTIRQDP EMMQRWTRYK SKYLIDFTNE LTREVRDIRG PQVKSARNIF
AMPILEPESE AWFAQNLDDF LANYDWVAPM AMPLMEKVPL SESNEWLAEL VNKVAQRPGA
LEKTVFELQS KDWTQPEGNN AISGPILAGW MRQLQLSGAQ SFGYYPDNFI TGEPPLKDVR
PVLSSAWYPL YDR
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