Gene YpsIP31758_2008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_2008 
Symbol 
ID5387595 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand- 
Start bp2312749 
End bp2313837 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content47% 
IMG OID640864992 
Productlytic murein transglycosylase 
Protein accessionYP_001400981 
Protein GI153947335 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2951] Membrane-bound lytic murein transglycosylase B 
TIGRFAM ID[TIGR02283] lytic murein transglycosylase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.000275571 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATGAAAG GGTCAGTTAC GGCAGTCATA TTGGCGACAG CCATCTCCTT TGGTTGCGTC 
AGTAAAAACG CTAAGGCTCT CGTGGCGGGG GGTACCTCGC CACGGTCAAC ATCAAAATCT 
ATGTTAACCC CAGGGGCTAC GGCTAGCAGT ACCCCCACGA TGTTATCTCA GCAAGGGCGT 
GATCCGTCTC AGTTTCCAGC TTATGTTGAG CAGTTAAAAG CGCAAGCCAG GGCTAAAGGC 
TATACAACCG AGACCTTGGA TACGGCTTTT GCTAATATTC ATTTTGTCGA TCGGGTCATC 
AAATCAGACC GTAATCAATT AGAAAAGAAA ATCACGCTGG ATGATTATCT AACCAGAGTA 
CTTCCGCGAA AGAGAATTGA GCAGGGTAGA GCACTTTATC AACGTTACCA GCCGCAGTTA 
TCTCAGGTGA ACGCACAATA TGGTGTCCCT GGGCGGTATA TTGTCGCGCT CTGGGGTATG 
GAAAGTGCTT TTGGTCAAAT TCAAGGTAAA GAAGATGTGA TTTCCGCTTT ATCTACCTTG 
GCTTTTGAAG GGCGTAGGGA AGCTTTTTTT ACCAAAGAAC TGATGGCTGC GTTGGAAATT 
ATTCATCAAG GGAAGGTTGA CGACCCCCAA TTGAGAGGAT CTTGGGCGGG GGCGATGGGG 
CAAAGTCAGT TTATGCCCAG CTCTTTCCTG ACGTATGGTG CTGACGGTGA TAGTGATGGA 
AAAATTGATA TTTGGAATAA TATTGATGAT GTATTTGCTT CTACTGCTAA TTATCTGTCT 
ACTCAAGGTT GGAAATCTGA ACAGGGATGG GGCCAGGAAG TCACGTTACC GCAAGATTTT 
AATGTGAAAT TAGCGGGGTT GGATGATGGG CAAGCCAAGA GCATTGCCCA ATGGCAGAAA 
CTGGGTATCA CGCCGGTACA AAACGCGCAC TTTGCTGAAT CTGCTGCGCG TGCCTGGGTG 
ATCATTCCTG ATGATCTAAA GGGGCGTGCT TTTCTGGTTT ATGACAATTT CCGGACGATC 
ATGCATTGGA ATCGCTCTTA CTATTTCGCT ATTAGCATTG GTATGATGGC CGATAGTATC 
GGTCAATAG
 
Protein sequence
MMKGSVTAVI LATAISFGCV SKNAKALVAG GTSPRSTSKS MLTPGATASS TPTMLSQQGR 
DPSQFPAYVE QLKAQARAKG YTTETLDTAF ANIHFVDRVI KSDRNQLEKK ITLDDYLTRV 
LPRKRIEQGR ALYQRYQPQL SQVNAQYGVP GRYIVALWGM ESAFGQIQGK EDVISALSTL 
AFEGRREAFF TKELMAALEI IHQGKVDDPQ LRGSWAGAMG QSQFMPSSFL TYGADGDSDG 
KIDIWNNIDD VFASTANYLS TQGWKSEQGW GQEVTLPQDF NVKLAGLDDG QAKSIAQWQK 
LGITPVQNAH FAESAARAWV IIPDDLKGRA FLVYDNFRTI MHWNRSYYFA ISIGMMADSI 
GQ