Gene YpsIP31758_1979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1979 
SymboltopB 
ID5385312 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp2279181 
End bp2281106 
Gene Length1926 bp 
Protein Length641 aa 
Translation table11 
GC content49% 
IMG OID640864963 
ProductDNA topoisomerase III 
Protein accessionYP_001400952 
Protein GI153949900 
COG category[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA 
TIGRFAM ID[TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000598454 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGACTGT TTATTGCCGA AAAACCCAGT TTAGCGCGAG CGATTGCAGA TATTTTGCCA 
AAACCGCATC GTCGAGGTGA TGGATTCATC GCCTGTGGTA ATGATCAAAT GGTGACCTGG
TGTGTTGGTC ATTTACTCGA ACAAGCCCAG CCGGATGCTT ATGACAGCCG TTATGCACGT
TGGTCATTAG CGGACTTACC GATCATTCCT GAAAAATGGC AGCTACAACC TCGTCCTTCC
GTCAGCAAAC AACTCAATGT GATTAAGCAA CTGTTACAGC AAGCCGATGA AGTGGTCCAT
GCTGGCGACC CGGATAGAGA AGGGCAACTG TTAGTTGATG AGGTGCTGGA TTATTTGGGA
TTGGCCGCAG AGAAACGGCA AAATGTTCGT CGTTGCTTGA TTAACGATTT AAACCCACAG
GCGGTTGAGC GTGCAGTGGA GCGCTTGCGT TATAACCGCG AGTTTATCCC GCTGTGTGTT
TCTGCGTTGG CTCGAGCCAG AGCCGATTGG CTCTATGGCA TCAATATGAC TCGCGCCTAT
ACCATTCTTG GGCGCAATGC GGGCTATGAC GGTGTTTTAT CCGTCGGGCG GGTACAAACG
CCCGTATTGG GGCTGGTTGT TCGCCGTGAT GAAGAGATTG AAAGCTTCAT TCCCAAAGAT
TTTTTTGAAG TTAAAGCCCA CATAGTGACG CCTGCAGACG AACGTTTTAT TGCTCTCTGG
CAGCCGAGTG ACTCCTGCGA ATCTTATCAG GACGAAGAAG GGCGCTTGTT GCATCGGCCG
CTTGCAGAAC ATGTTGTCAA TCGCATAACC GGCCAGCCCG CGCTGGTGAC ATCCTATAAT
GATAAACGGG AATCGGAAAC GGCACCGTTG CCATTCTCCT TGTCTACATT ACAAATCGAA
GCTGCAAAAC GTTTCGGCCT CAGTGCTCAG CAAGTATTGG ATATTTGCCA ACGGTTGTAT
GAAACGCACA AATTGATTAC GTATCCCCGT TCGGATTGCC GATATCTACC TGAAGAGCAT
TTTGCCGGGC GTCATTCGGT GCTTAATGCC ATTAGTCTTC ATCAGTCAGA CCTTTTGCCG
CTTGAGGTCA TGGATAGTGA TCGGCGCAAC CGCTGCTGGG ATGATAAAAA AGTCGATGCG
CACCACGCTA TTATCCCAAC CGCACGTGCC AGCAAAGTGA ATTTGACGAC GGATGAAGGC
AAAGTATACC GGTTGGTGGC ACAGCAATAT CTGATGCAAT TCTGTCCAGA TGCACAGTTC
CGTAAGTGTG TGATTGAATT GGATATCGCT GGCGGGAAAT TTATTGCCAA GGCACGCTTT
TTGGCCGAGG CGGGATGGCG GACCTTACTG GGCAGTAAAG AGCGTGATGA AGAGAACGAA
GGAGCGCCAT TGCCGGTGGT AGCCAAAGGG GCTGAATTAT TATGCGAACG CGGTGAGGTT
GTTGAACGAC AAACTCAGCC ACCCCGGCCT TTCACCGACG CCAGTTTATT ATCGGCGATG
ACAGGAATTG CGCGTTTCGT ACAGGATAAA GAACTGAAAA AAGTTTTGCG AGCCACCGAT
GGCTTGGGTA CGGAAGCCAC TCGAGCAGGT ATTATCGAAC TGCTCTTCAA GCGCACTTTT
CTCTTTAAGA AAGGGCGTTA TATACATGCC AGCCCTGCGG GACGCGCGTT GATTCATGCA
TTACCGGATA TTGCGGCACG GCCAGATATG ACAGCACATT GGGAATCAAC GTTGACACAA
ATCAGTGAAA AAAACTGCCG CTATCAAGAT TTTATGCAAC CACTGGTGAT GACATTGCAG
GATTTAATTA GTCAGGCGAA ACAAAATCGT TCTCCACAGG TTTTCCGTGG GTTACCCGCC
GGCCCTTCAG GGGCACCCAA GAAACGTAAA AAAATATCGT CTAAGGCCAA GGAGAGTAAA
TCATGA
 
Protein sequence
MRLFIAEKPS LARAIADILP KPHRRGDGFI ACGNDQMVTW CVGHLLEQAQ PDAYDSRYAR 
WSLADLPIIP EKWQLQPRPS VSKQLNVIKQ LLQQADEVVH AGDPDREGQL LVDEVLDYLG
LAAEKRQNVR RCLINDLNPQ AVERAVERLR YNREFIPLCV SALARARADW LYGINMTRAY
TILGRNAGYD GVLSVGRVQT PVLGLVVRRD EEIESFIPKD FFEVKAHIVT PADERFIALW
QPSDSCESYQ DEEGRLLHRP LAEHVVNRIT GQPALVTSYN DKRESETAPL PFSLSTLQIE
AAKRFGLSAQ QVLDICQRLY ETHKLITYPR SDCRYLPEEH FAGRHSVLNA ISLHQSDLLP
LEVMDSDRRN RCWDDKKVDA HHAIIPTARA SKVNLTTDEG KVYRLVAQQY LMQFCPDAQF
RKCVIELDIA GGKFIAKARF LAEAGWRTLL GSKERDEENE GAPLPVVAKG AELLCERGEV
VERQTQPPRP FTDASLLSAM TGIARFVQDK ELKKVLRATD GLGTEATRAG IIELLFKRTF
LFKKGRYIHA SPAGRALIHA LPDIAARPDM TAHWESTLTQ ISEKNCRYQD FMQPLVMTLQ
DLISQAKQNR SPQVFRGLPA GPSGAPKKRK KISSKAKESK S