Gene YpsIP31758_1958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1958 
SymboloppC 
ID5385933 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp2257775 
End bp2258680 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content47% 
IMG OID640864942 
Productoligopeptide ABC transporter, permease protein OppC 
Protein accessionYP_001400933 
Protein GI153948719 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value0.268975 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGAGCA AGAAAAATAG CGAAGCTCTG GACGTTTTCA GTGAAAAACT GGAAGTGGAA 
GGGCGCAGTC TTTGGCAGGA TGCCCGCCGT CGCTTTGTGC ATAACCGTGC GGCGATCACC
AGTTTGGTGA TCCTGATGTT AATTACCTTA TTTGTTATTT TGGCTCCAAT GCTCGCGCAG
TTTACCTATG AGGATACGGA TTGGGGGATG ATGTCAGCCG CTCCTGATAT TGAGTCAGGT
CACTATTTTG GCACCGATTC ATCTGGCCGT GATTTACTGG TACGGGTTGC CATTGGGGGG
CGTATTTCAT TGATGGTTGG CGTCGCTGCC GCGTTGGTTG CCGTGGTTGT CGGTACCTTA
TACGGCTCTT TGTCCGGTTA TCTTGGCGGA AAAATAGATT CGCTAATGAT GCGTTTGCTC
GAGATTCTTA ACTCCTTTCC TTTTATGTTC TTCGTTATTT TACTGGTTAC CTTCTTCGGC
CAGAATATTT TATTGATCTT TGTCGCTATC GGTATGGTCT CGTGGCTGGA TATGGCACGT
ATTGTTCGTG GGCAAACATT AAGCTTGAAA CGGAAAGAAT TTATTGAAGC CGCCCTGGTT
GGCGGGGTTT CAACCCGCAA TATTGTCTTG CGCCATATTG TGCCGAATGT CCTTGGGGTC
GTTGTGGTAT ACGCCTCTTT ATTGGTACCA AGTATGATCC TATTCGAGTC TTTTTTGAGT
TTCCTTGGAT TAGGGACACA AGAACCACTG AGTAGTTGGG GGGCACTGTT GAGTGATGGT
GCCAATTCAA TGGAAGTCTC ACCGTGGCTG CTGATGTTCC CTGCCGGTTT CCTGGTAGTG
ACATTGTTTT GTTTTAACTT TATCGGCGAT GGCTTACGTG ATGCCCTTGA TCCGAAAGAT
CGCTGA
 
Protein sequence
MLSKKNSEAL DVFSEKLEVE GRSLWQDARR RFVHNRAAIT SLVILMLITL FVILAPMLAQ 
FTYEDTDWGM MSAAPDIESG HYFGTDSSGR DLLVRVAIGG RISLMVGVAA ALVAVVVGTL
YGSLSGYLGG KIDSLMMRLL EILNSFPFMF FVILLVTFFG QNILLIFVAI GMVSWLDMAR
IVRGQTLSLK RKEFIEAALV GGVSTRNIVL RHIVPNVLGV VVVYASLLVP SMILFESFLS
FLGLGTQEPL SSWGALLSDG ANSMEVSPWL LMFPAGFLVV TLFCFNFIGD GLRDALDPKD
R