Gene YpsIP31758_1956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1956 
SymboloppF 
ID5386343 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand- 
Start bp2255764 
End bp2256765 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content45% 
IMG OID640864940 
Productoligopeptide ABC transporter, ATP-binding protein OppF 
Protein accessionYP_001400931 
Protein GI153949886 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value0.277866 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGCCA TGACAGAGAA GAAAGTATTA TTAGAAGTGG CTGATTTGAA GGTGTATTTT 
AACATTCAAG ATGGAAAACA ATGGTTTTGG CAGCCTTCAA AGACACTAAA AGCTGTCGAT 
GGTGTCACAT TGCGTTTATA TGAGGGTGAA ACGCTGGGGG TGGTTGGGGA GTCAGGTTGT 
GGCAAATCAA CATTTGCCCG AGCTATCATT GGTTTGGTGA AAGCCACCGG AGGGAGCGTT 
GCCTGGTTAG GGAAAGACTT GCTCAATATG AGTGATGCAG ACTGGCGTGC GACCCGTAGC 
GATATCCAAA TGATATTTCA GGATCCATTA GCGTCATTAA ACCCACGAAT GACCATCGGT 
GAAATCATTG CTGAACCATT ACGCACTTAT CATCCAAAAA TTTCACGCCA GGAAGTAAAA 
GATAAAGTTA AAGCAATGAT GCTTAAAGTC GGGCTACTGC CTAACTTAAT CAACCGCTAT 
CCTCATGAAT TTTCAGGAGG GCAGTGCCAG CGTATTGGTA TTGCCCGCGC ATTGATCCTC 
GAACCTAAAC TGGTGATCTG TGATGAGCCA GTCTCTGCCC TTGACGTATC AATTCAAGCT 
CAAGTCGTGA ATTTATTGCA GCAATTGCAG CGTGAGATGG GGTTGTCACT TATTTTTATT 
GCTCATGATT TAGCGGTGGT AAAACATATT TCTGATCGGG TATTGGTGAT GTATCTAGGC 
CACGCGGTGG AGTTGGGGAC CTATGATGAG GTTTACCATA ACCCGCAACA TCCCTATACA 
AAAGCATTGA TGTCTGCGGT TCCAATTCCA GATCCAGATA AAGAAAGAGT AAAAGTCATT 
CAGTTGCTTG AAGGAGAATT GCCTTCACCG ATTGATCCCC CCTCAGGCTG TGTATTCCGC 
ACCCGTTGCC CAATTGCCGG TACGGAATGT GCGAAAACAC GTCCTTTATT AGAAGGGAGT 
TTCCGCCACG CGGTTTCGTG CCTTAAAGTT GACCCACTGT AA
 
Protein sequence
MNAMTEKKVL LEVADLKVYF NIQDGKQWFW QPSKTLKAVD GVTLRLYEGE TLGVVGESGC 
GKSTFARAII GLVKATGGSV AWLGKDLLNM SDADWRATRS DIQMIFQDPL ASLNPRMTIG 
EIIAEPLRTY HPKISRQEVK DKVKAMMLKV GLLPNLINRY PHEFSGGQCQ RIGIARALIL 
EPKLVICDEP VSALDVSIQA QVVNLLQQLQ REMGLSLIFI AHDLAVVKHI SDRVLVMYLG 
HAVELGTYDE VYHNPQHPYT KALMSAVPIP DPDKERVKVI QLLEGELPSP IDPPSGCVFR 
TRCPIAGTEC AKTRPLLEGS FRHAVSCLKV DPL