| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1823 |
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| Symbol | |
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| ID | 5386174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 2105710 |
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| End bp | 2108694 |
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| Gene Length | 2985 bp |
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| Protein Length | 994 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640864807 |
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| Product | putative toxin protein |
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| Protein accession | YP_001400798 |
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| Protein GI | 153947357 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0293647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAACAT CATTGTTCAG TAAAACCCCT TCGGTCACGG TTCTTGATAA CCGCGGCCTG
ACCGTGCGCG ACATCGCATA CCACCGCCAT CCCGACTCGC CGGATGTTAC CAGTGAGCGT
ATCACCCACC ATCAGTACGA CGCCCGCGGC TTTCTGACCC AGAGCGCCGA CCCGCGCCTG
CATGGTGCCG GGCTGATGAA CTTCAGCTAC CTGACGGACC TGACCGGCCG CATCCTGCGC
ACGCAGGGGG CGGATAACGG TACCACCGTC AGCCTGAATG ATGCTGCCGG ACGACCATTT
ATCTCGGCCA GTAATATCAG CACCAGCGAC GACGGTACTG AAGACAGAGG CCAGGCGATG
ACCCGCACCT GGCAGTATGA GGAGGCTTCA CTGCCGGGAC GTCTGGTGAG CGTAACCGAA
CAGGTGACCG GCAAAGCCAC CCGCATCACG GAGCGCTTCG TGTACGCTGC CAATACTGAC
GCGGAAAAAA GCCTGAACCT GGCCGGCGCG TGCGTCAGCC ATTACGACAC TGCGGGACTG
GTGCAGCCGG ACAGCATTGC CCTGACCGGT GTACCGCTCT CTGTCACCCG CCGCCTGATG
AAAAGTGCGG ATAACCCGGA CGCCGTGGCC GACTGGCAGG GGGCGGACGC CTCCGCCTGG
AACGACCAAC TGGACGGCGA AACGCATACC ACCCTGACCA CCGCGGACGC CACCGGGGCG
GTGCTGACCA CCACCGATGC GAAAGGTAAC CTGCAGCGCA TGGCGTACGA CGTGGCGGGC
CTGCTGTCGG GCAGTTGGCT GACCCTGAAG GATGGCACAG AGCAGGTCAT CGTGAAGTCC
CTGACATACT CAGCCGCCGG GCAGAAGCTG CGCGAGGAGC ACGGCAACGG CGTGGTGACC
ACGTACGAAT ACGAGCCGGA AACGCAGCGC CTGGTCGGGA TTAAAACGGA ACGTCCCGCC
GGGCACGCCT CCGGGGCGAA GGTGCTGCAG GACCTGCGTT ACGAGTACGA CCCGGTGGGC
AACGTGCTGA AGGTCACTAA CGATGCGGAA GAGACGCGCT TCTGGCGCAA TCAGAAAGTG
GTGCCTGAGA ACACGTACAC CTACGACAGC CTGTACCAGT TGGTCAGCGC CACCGGGCGC
GAGATGGCAA ACGCCGGCCA GCAGAGCTGC AGCTTACCGT CCACCACCGT CCCCCTTCCT
GCCGACAGCT CCGCGTATAC CCGCTACTCC CGAACCTATA CCTACGACGA AGCCGGCAAC
CTGACGCAAA TTAGGCACAA TGCCCCGGCC ACCAACAACA GCTACACCAC AAAAATCACC
GTCAGTGACC GCAGCAACCG GGGTGTACTA AGCACACTGA CCGAAAATGC CGCAGACGTG
GACGCGCTGT TCACGGCAGG CGGGCAGCAG GCTCAGTTGC AGCCGGGACA GCATCTTATC
TGGACGGCAC GTAATGAGCT GCTGAAGGTG ACGCCAGTGG TCCGCGACGG CAGCACGAAC
GACAGCGAAA GCTACCGCTA TGATGCAGCC AGCCAGCGAA TCCTGAAGGT CAGCAGGCAG
AAAACGAACA CCAGCATGCA GACACAGCGG GTGCTGTACC TGCCAGGGCT GGAGCTGAGG
AGTACAAAAT CCGGCGATAC GGAAACGGAA GGCCTGCAGA TTATCACAGT GGGTGAGGCG
GGCCGTGCGC AGGTGCGGGT GCTGCACTGG GAGAGCGGCA GGCCGGATGA AATCACTGAC
GACCAGATAC GTTACAGTTA CGACAATCTG GCCGGTAGCT GCAGCCTGGA ACTGGGCGGT
GACGGCAATA TCATCAGCGC GGAGGAGTAT TATCCGTACG GCGGCACGGC GGTCTGGGCG
GTGCGGCGCG CGGTGGAAGC GGATTACAAA ACCGTCCGCT ACTCTGGTAA GGAACGGGAT
GCGACGGGGT TGTACTACTA CGGGTACCGG TACTATCAGC CGTGGGCGGG CAGATGGCTC
TCCGCAGACC CGGCTGGCAT GGTGGACGGG CTGAATCTGT TCAGGATGGC GCGCAATAAT
CCTGTTGCGT TTATTGATCG TAATGGTCTT AATTCAGAAT TGTTATATTC TCAGGCATTC
AAGCGGACGG CAAATAAATA TAACGTAATT ATTGGTGTAA GGGCACCTAA TCCATTAGGT
GAAACTTTAT TAAAAGAAGG CTTTCCATCA AAAAATTTCC ATATGAAGGC AAAATCCAGT
CCAACAGGAC CAACTGCAGG TTTTATTGCA GAAGACCCGA TTTACTCTAA GGTGTCACCT
TCTGCATATA AAAAACAGAG AGCATCAATT GATAAGGCAA AAGCTTTGGG CTCAGAATCT
ATAGATTTAT TCATTAGCAA ATCACGAATT AATGAGTTAA TAGAGACTGG GAATTTAAAT
TTTCTAGGCG AAAATCGTTA CTCAGCGAAG TATCCGTATG GTACTCAAGA GTTTGAGATT
GGAAATAATG GAAGAGTTTT AAATTCAGAG GGAAAACCTG TTAAAGTAAT GACTAATCCA
CCGGAGATTG GAGAGAGAAA AAGCAATAGT TCCCCCATAA CAGCCGATTA CGATTTGTTT
GCAATTATAC CAAGTGTTAA TCAGTCAGTT AATGAAAGAC CCCTGACAGT GCCTCATAAG
TTATTACGTG GTAATTTTTC TCTCCCCTTC ACCAGTCCAA AAGGGAAAAA TGGCATGAGT
GAAGATGTAA ATATGGGAAA TCTTCATCAT TTTGGGAAAA CGATCGTCAA CAGTTTAAAT
AAAGAGATTA ACGCAGAGGG ATATGCTGGC GGTAAATTGG TCTGGCATAA CGATGAAGCT
GGAAATCCAT TTAGCCCTGG ATTTGATGAG AATGACAAAC CAATTTTCTT CCTCCCATCA
GGAGGTATGT TCCAGGCAAA AAATAAAAGT GAATTGCTTG GTTTTTATTC CAGATTGCGG
AGGAGTGGAT ACACTCCAGA GCATAGTCCA ATTTTTGGTT TTTAA
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| Protein sequence | MRTSLFSKTP SVTVLDNRGL TVRDIAYHRH PDSPDVTSER ITHHQYDARG FLTQSADPRL
HGAGLMNFSY LTDLTGRILR TQGADNGTTV SLNDAAGRPF ISASNISTSD DGTEDRGQAM
TRTWQYEEAS LPGRLVSVTE QVTGKATRIT ERFVYAANTD AEKSLNLAGA CVSHYDTAGL
VQPDSIALTG VPLSVTRRLM KSADNPDAVA DWQGADASAW NDQLDGETHT TLTTADATGA
VLTTTDAKGN LQRMAYDVAG LLSGSWLTLK DGTEQVIVKS LTYSAAGQKL REEHGNGVVT
TYEYEPETQR LVGIKTERPA GHASGAKVLQ DLRYEYDPVG NVLKVTNDAE ETRFWRNQKV
VPENTYTYDS LYQLVSATGR EMANAGQQSC SLPSTTVPLP ADSSAYTRYS RTYTYDEAGN
LTQIRHNAPA TNNSYTTKIT VSDRSNRGVL STLTENAADV DALFTAGGQQ AQLQPGQHLI
WTARNELLKV TPVVRDGSTN DSESYRYDAA SQRILKVSRQ KTNTSMQTQR VLYLPGLELR
STKSGDTETE GLQIITVGEA GRAQVRVLHW ESGRPDEITD DQIRYSYDNL AGSCSLELGG
DGNIISAEEY YPYGGTAVWA VRRAVEADYK TVRYSGKERD ATGLYYYGYR YYQPWAGRWL
SADPAGMVDG LNLFRMARNN PVAFIDRNGL NSELLYSQAF KRTANKYNVI IGVRAPNPLG
ETLLKEGFPS KNFHMKAKSS PTGPTAGFIA EDPIYSKVSP SAYKKQRASI DKAKALGSES
IDLFISKSRI NELIETGNLN FLGENRYSAK YPYGTQEFEI GNNGRVLNSE GKPVKVMTNP
PEIGERKSNS SPITADYDLF AIIPSVNQSV NERPLTVPHK LLRGNFSLPF TSPKGKNGMS
EDVNMGNLHH FGKTIVNSLN KEINAEGYAG GKLVWHNDEA GNPFSPGFDE NDKPIFFLPS
GGMFQAKNKS ELLGFYSRLR RSGYTPEHSP IFGF
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