Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1815 |
Symbol | hrpA |
ID | 5386680 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 2096737 |
End bp | 2100624 |
Gene Length | 3888 bp |
Protein Length | 1295 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640864799 |
Product | ATP-dependent RNA helicase HrpA |
Protein accession | YP_001400790 |
Protein GI | 153948605 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.774398 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAATCTT CGCTCACAGC ATTATCCACT CAACTTGGTG AGTTGATGCT CCGTGACCAA CAGCGCATTC AGCGTCGGCT ACATAGCGCA CGAAAAATCA ATAACCCTGA CGCCATACAG GCGATTACTC ACGAAATTGA AGCCGAAATC GCGATAGCAA TGCAGCGAGT AACCCGCCGT CGGGCGGCTT GTCCGGCGAT CAGTTATCCA GATAATCTGC CCGTCAGCCA GAAGAAACAG GATATTTATA ACGCTATCCG TGACCATCAG GTGATCATTG TCGCCGGTGA GACTGGGTCG GGTAAAACGA CACAGTTGCC GAAAATCTGC CTGGAACTGG GGCGGGGGGT GAAAGGCGTT ATCGGCCACA CTCAGCCACG CCGTTTGGCC GCACGGACGG TGGCTAACCG CATTGCCGAT GAGCTGGATA CTTCGCTTGG CGGCTGTGTT GGTTACAAAG TTCGTTTTAA CGATCAGGTC GGTGAAAATA CACTGGTCAA ATTAATGACG GATGGCATTC TGCTGGCTGA AATTCAGCAA GATCGCCTGC TGATGCAATA TGACACGTTG ATCATTGATG AGGCCCACGA ACGTAGCCTT AACATTGATT TTATCTTGGG CTATTTACGT GAGTTATTAC CTAAACGCCC TGATCTGAAA GTGATCATTA CGTCAGCGAC TATTGACCCG CAACGCTTCT CACAACATTT CAATAACGCC CCAATTATTG AGGTCTCTGG CCGTACCTAC CCGGTGGAGG TGCGCTACCG GCCGATTGTG GATGATGCCG ATGATGTTGA TCGGGACCAA TTGCAGGCCA TTTTTGATGC AGTCGATGAG TTGGGCCGTG AAAGCGCCGG GGATATCTTA ATCTTTATGA GCGGTGAGCG CGAAATCCGT GACACAGCGG ATGCGTTGAT AAAGCAAAAT TTGCCACACA CCGAAGTGCT ACCGCTGTAT GCCCGCTTAT CAAACAGTGA GCAGAACCGG GTGTTTCAGT CACATCATGG GCGGCGAATT GTGTTGGCAA CCAACGTGGC AGAAACGTCA CTCACGGTGC CGGGTATCAA ATATGTTATC GATCCCGGCA CAGCACGTAT CAGCCGTTAC AGTTTCCGTA CCAAGGTCCA GCGGTTACCG ATTGAGCCTA TTTCTCAGGC ATCGGCTAAT CAGCGTAAAG GGCGGTGTGG CCGTGTCTCT GACGGTATTT GTATTCGTCT TTATTCCGAG CAAGATTTTC TCTCCCGCCC TGAGTTCACG GATCCAGAAA TCCTACGGAC CAATCTGGCT TCGGTGATCT TGCAAATGAC CTCTTTGGGG CTAGGGGATA TCGCTGCATT TCCCTTTGTT GAAGCACCGG ATAAACGCAA TATCCAAGAC GGTGTAAGGT TACTGGAGGA ACTGGGGGCC ATTCAGACCG CCAGTAACGG GCATCAGCAA TTGACCCCAT TGGGCCGCCA GTTAGCCCAA CTTCCTGTCG ATCCACGCTT GGCCAGAATG GTATTGCAAG CGCAGAAAAG TGGCTGCGTA CGTGAATTAA TGATTATCAC CTCGGCGTTA TCTATTCAGG ATCCGCGTGA GCGTCCGGTA GATAAACAGC AGGCCTCTGA TGAAAAACAC CGCCGTTTTG CGGATAAAGA TTCCGATTTT CTCGCCTTTG TTAATCTGTG GGATTATCTC AAAGAACAAC AAAAAGCGTT GTCATCAGCA CAATTTCGTA AGCTTTGCCG CAGCGATTAC CTGAATTACC TACGGGTGCG TGAATGGCAG GATATTTACA CTCAGTTGCG GCAGGTCGTT AAAGAGTTAG GGATACCCGT CAACAGTGTT GCCGCAGACT ACCGCAGTGT ACATACCGCG ATACTGACCG GTTTACTTTC TCACATTGGG CAGAAAGATG TTGAGAAGCA AGAGTTTACC GGTGCTCGTA ACGCCCGCTT TGCTATTTTC CCCGGCTCCG GCTTATTCAA AAAGCCTCCC AAGTGGGTCA TGGTGGCTGA ATTGGTCGAA ACCAGCCGTT TATGGGGGCG CATTGCTGCA CGTATTGAAC CCGAATGGAT TGAGCCTTTA GCCCAGCACC TGGTGAAACA CCATTACAGC GATCCACATT GGGAGAAAGC TCAGGGCGCG GTAATGGCCA GCGAGAAAGT GACCTTATTC GGCTTACCGA TTGTTACGGA GCGTAAGATC AATTACGGCC CGATCGATCC ACTGCTCTGC CGTGAGTTGT TTATTCGCCA CGGGTTGGTT GAAGGTGACT GGCAGACGCG GCACGCGTTC TTCCGAATGA ATCTTAAGCT ATTGGCTGAA GTGGAAGAGT TGGAACACAA ATCCCGTCGG CGGGATATTC TGGTCGATGA CGAGACACTC TTTAACTTTT ATGATCAAAG AATTGGTCGT GATGTTATTT CTGCCCGCCA TTTTGATAGC TGGTGGAAGC AAGCGAGCCA GACGAAACCC GAGCTGCTGA ACTTTGAAAA AACCATGCTT ATCAAAGAGG GTGCGAACAA AGTAAACCCG CTTGATTATC CGAATTTTTG GTATCAAGGG GAGCTAAAAC TCCGTCTGTC TTATCAGTTT GAACCCGGCA CCGATGCCGA TGGTGTCACA GTACACATTC CATTACCTAT TCTGAACCAG ATCCATGAGC AGGGGTTTGA CTGGCAGATC CCAGGGATTC GCCGCGAACT GGTGATAGCA CTGATTAAAT CATTGCCCAA ACCGGTACGG CGTAATTTTG TTCCGGCACC TAATTATGCC GATGCTTTTC TGGCACGGGT AACACCACTC GAAACGGGTT TATTGGAGGC TTTGGAGCGT GAATTACGCC GCATGACTGG CGTGACGGTG TCACGTGATA GTTGGCAGTT AGATCAGGTG CCTGACCATC TGAAAATAAC GTTTCGTGTG CTGGATGATA AAAACCGTAT TTTGCGAGAA GGCAAAGATC TTGCCGCCCT AAAGTTACAG TTGCAAGAGA AAGTACAGGA AACACTTTCT GCCGTCGCGG ATGATGGTAT TGAACAAAAT AACTTACATA TCTGGAGTTT TGGCGATCTC CCTATCTGCT ATGAGCAACG GCGCGGTGGC TATGAAGTCA AAGCCTATCC AGCGTTAGTG GATGAAAAAG ACAGTGTTGC CATCCGTTTG TTCGATACAG AATCGCAACA ACAACAGGCT ATGTGGCAGG GTACCCGGCG TTTATTGCTA CTCAATATTC CTTCGCCGAT TAAATACTTA CATGAGAAAT TGCCGAATAA ATCCAAACTG GGTCTCTATT TCAATACGTA TGGCAACGTA ATGGATCTGA TTGATGACTG CATCGCCTGT GGCGTCGATA AACTGGTGGC ACAGCATGGT GGCCCGGTCT GGCAGGAGGC TGATTTTGCT CGTTTACAAG AAAAAGTCCG TGCGGAACTG AATGACACCG TGGTGGATAT TGCCAAGCAG GTTGAGCAGA TCCTCACGCT GGTGTTCAGT ATTAATAAGC GGTTGAAAGG CCGGATCGAT ATTTCACTGG CATTGGCGCT TTCTGATATT AAAGCTCAGC TTGCTGGCCT TATCTATCGT GGATTTGTCA CGAGTAATGG CTGGAAGCGT TTGCCTGATA CTTTACGTTA TTTAAAGGCT ATTGAGCGGC GCTTAGAAAA ACTGGCGGTT GATCCTCATC GCGATAGGGC GCAAATGCTG CGAATTGAGC ATGTTCAGCA AGTATGGCAA CAGTGGTTGA ATAAATTACC GCCTAAACGT CAGCAAGATG AAGAGGTTAA AGAAGTCCGT TGGATGATTG AAGAACTGCG TGTCAGTTTA TTTGCTCAAC AACTGGGCAC CCCTTATCCG GTGTCTGACA AACGTATCTT ACAAACGATC GAACAGCTTT CTGTCTGA
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Protein sequence | MKSSLTALST QLGELMLRDQ QRIQRRLHSA RKINNPDAIQ AITHEIEAEI AIAMQRVTRR RAACPAISYP DNLPVSQKKQ DIYNAIRDHQ VIIVAGETGS GKTTQLPKIC LELGRGVKGV IGHTQPRRLA ARTVANRIAD ELDTSLGGCV GYKVRFNDQV GENTLVKLMT DGILLAEIQQ DRLLMQYDTL IIDEAHERSL NIDFILGYLR ELLPKRPDLK VIITSATIDP QRFSQHFNNA PIIEVSGRTY PVEVRYRPIV DDADDVDRDQ LQAIFDAVDE LGRESAGDIL IFMSGEREIR DTADALIKQN LPHTEVLPLY ARLSNSEQNR VFQSHHGRRI VLATNVAETS LTVPGIKYVI DPGTARISRY SFRTKVQRLP IEPISQASAN QRKGRCGRVS DGICIRLYSE QDFLSRPEFT DPEILRTNLA SVILQMTSLG LGDIAAFPFV EAPDKRNIQD GVRLLEELGA IQTASNGHQQ LTPLGRQLAQ LPVDPRLARM VLQAQKSGCV RELMIITSAL SIQDPRERPV DKQQASDEKH RRFADKDSDF LAFVNLWDYL KEQQKALSSA QFRKLCRSDY LNYLRVREWQ DIYTQLRQVV KELGIPVNSV AADYRSVHTA ILTGLLSHIG QKDVEKQEFT GARNARFAIF PGSGLFKKPP KWVMVAELVE TSRLWGRIAA RIEPEWIEPL AQHLVKHHYS DPHWEKAQGA VMASEKVTLF GLPIVTERKI NYGPIDPLLC RELFIRHGLV EGDWQTRHAF FRMNLKLLAE VEELEHKSRR RDILVDDETL FNFYDQRIGR DVISARHFDS WWKQASQTKP ELLNFEKTML IKEGANKVNP LDYPNFWYQG ELKLRLSYQF EPGTDADGVT VHIPLPILNQ IHEQGFDWQI PGIRRELVIA LIKSLPKPVR RNFVPAPNYA DAFLARVTPL ETGLLEALER ELRRMTGVTV SRDSWQLDQV PDHLKITFRV LDDKNRILRE GKDLAALKLQ LQEKVQETLS AVADDGIEQN NLHIWSFGDL PICYEQRRGG YEVKAYPALV DEKDSVAIRL FDTESQQQQA MWQGTRRLLL LNIPSPIKYL HEKLPNKSKL GLYFNTYGNV MDLIDDCIAC GVDKLVAQHG GPVWQEADFA RLQEKVRAEL NDTVVDIAKQ VEQILTLVFS INKRLKGRID ISLALALSDI KAQLAGLIYR GFVTSNGWKR LPDTLRYLKA IERRLEKLAV DPHRDRAQML RIEHVQQVWQ QWLNKLPPKR QQDEEVKEVR WMIEELRVSL FAQQLGTPYP VSDKRILQTI EQLSV
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