Gene YpsIP31758_1785 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1785 
SymbolpspF 
ID5386746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand- 
Start bp2063730 
End bp2064758 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content51% 
IMG OID640864769 
Productphage shock protein operon transcriptional activator 
Protein accessionYP_001400760 
Protein GI153950560 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 
TIGRFAM ID[TIGR02974] psp operon transcriptional activator PspF 


Plasmid Coverage information

Num covering plasmid clones53 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGAGC AACTGGATAA TCTGCTCGGC GAAGCAAACG CGTTTGTTGA CGTGCTGGAG 
CAAGTCTCGG GACTGGCAAA ATTGAACAAA CCCGTGTTAG TCATTGGGGA GCGTGGTACC 
GGTAAGGAAT TGATTGCCCA TCGCCTGCAC TACTTATCAG AACGTTGGCA AGGGCCATTT 
ATCTCCCTTA ACTGCGCCGC ACTCAATGAG AACTTACTCG ATTCAGAGTT ATTCGGCCAT 
GAAGCCGGGG CCTTTACTGG CGCGCAAAAA CGTCATCTGG GCCGGTTTGA ACGCGCGGAT 
GGCGGCACTT TATTTTTGGA TGAATTAGCG ACAGCACCTA TGCTGGTTCA GGAAAAATTA 
TTACGCGTGA TTGAGTACGG CCACTTGGAG CGTGTTGGCG GCAGCCAGCC ATTGCAGGTC 
GATGTCCGTT TAGTCTGCGC CACCAATGAT AATCTGCCCG CGTTGGCGGC TGCCGGAAAA 
TTCCGTGCCG ACCTGCTAGA CCGCCTCGCC TTTGATGTCG TGCAATTGCC CCCACTGCGT 
GAGCGGCAGC AAGATATCAT GTTACTAGCC GAGCATTTCG CCATCCTAAT GTGCCGTGAG 
CTGGGTCTTC CCCTCTTTTC TGGTTTTACT GCTACGGCGA AAGAGCAATT ACTCGAATAC 
CGTTGGCCGG GGAATGTGCG TGAGCTAAAG AATGTGGTAG AGCGTTCGGT TTATCGCCAC 
AGCGACAGCA GTCTGCCACT CAATAATATT ATTATTAATC CTTTTGCTAG CAACCAGAAG 
GGTGAGATAG AGGGTGTGGA TACGCCCAAC GAGGGGGGAG CTGTGTTGCC CGCACTGCCC 
GTAGATTTGA AACATTGGCT GCACACCAGC GAACATCAGA TGCTAACACG GGCATTAAAG 
CAGGCTCGGT TTAATCAGCG TAAGGCGGCG CATTTATTGG GGTTAACCTA TCACCAACTA 
CGAGGCTTAT TAAAGAAACA TACAATTTTG AGTGGGGAGT TGCCCCAAGT CAGTGATTCC 
GGTGAGTGA
 
Protein sequence
MNEQLDNLLG EANAFVDVLE QVSGLAKLNK PVLVIGERGT GKELIAHRLH YLSERWQGPF 
ISLNCAALNE NLLDSELFGH EAGAFTGAQK RHLGRFERAD GGTLFLDELA TAPMLVQEKL 
LRVIEYGHLE RVGGSQPLQV DVRLVCATND NLPALAAAGK FRADLLDRLA FDVVQLPPLR 
ERQQDIMLLA EHFAILMCRE LGLPLFSGFT ATAKEQLLEY RWPGNVRELK NVVERSVYRH 
SDSSLPLNNI IINPFASNQK GEIEGVDTPN EGGAVLPALP VDLKHWLHTS EHQMLTRALK 
QARFNQRKAA HLLGLTYHQL RGLLKKHTIL SGELPQVSDS GE