Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1783 |
Symbol | sapB |
ID | 5387776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 2060545 |
End bp | 2061510 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640864766 |
Product | peptide ABC transporter, permease protein SapB |
Protein accession | YP_001400758 |
Protein GI | 153949890 |
COG category | [V] Defense mechanisms |
COG ID | [COG4168] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 48 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTATTT TCACATTACG GCGATTATTA CTGCTCGTGA TAACCCTGTT TATGTTGTCA TTAGTCAGCT TTAGCCTGAG CTATTTTACC CCCTATGCAC CGTTACATGG GGCCGGGTTG CTGGATGCCT ACCGCTTCTA TTTCAGTAGC TTGTTGCAAT GGGATTTTGG CATTTCCAGC ATTAATGGCC AACCAATCAG CGAGCAACTG CGAGAAGCCT TTCCCGCAAC CATGGAATTA TGTGTACTGG CCTTTGGCCT CGCGCTGTTT ATCGGTATTC CGCTGGGCAT TATTGCCGGT GTAATGCGGG GTAAATGGGC GGATATCGCC ATCAGTACCG TGGCGTTAAT CGGCTTCTCG ATCCCCGTAT TTTGGCTGGC CCTGTTACTG ATGTTGTTCT TTTCTCTGCA TCTGGGGTGG TTACCGGTTT CTGGCCGTTT TGACTTGCTT TATCAAGTAA AACCAGTGAC GGGGCTGGCA TTGGTCGATG CCTGGCTATC GCCCTCACCT TACCGCAACG AAATGATGCT CAGTGCACTT CAACATATGA TCCTACCAAT CACCGCACTG GCCGTGGCAC CAACAACCGA GGTCATCCGC TTGATGCGTA CCAGCACCGA CGACGTTATC GGGCAGAACT ACATTAAAGC CGCCGCAACC CGTGGGCTAT CCCGCTTCAC TATTATCCGC CGCCATGTTT TGCATAATGC CTTGCCGCCA ATTATTCCCA AATTGGGGTT GCAGTTCTCC ACCATGCTGA CACTGGCCAT GATCACCGAG GTGGTCTTTA ACTGGCCAGG GTTAGGACGC TGGCTGATTA ATGCGATCCG CCAACAGGAC TATGCCGCAA TCTCTGCGGG GGTGATGGTC GTGGGTTCGT TAGTGATCGT TATTAATGTG CTGTCGGATA TTCTGGGTGC CATGATGACC CCGTTAAAGC ATAAGGAATG GTATGCCCTT CGATAA
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Protein sequence | MIIFTLRRLL LLVITLFMLS LVSFSLSYFT PYAPLHGAGL LDAYRFYFSS LLQWDFGISS INGQPISEQL REAFPATMEL CVLAFGLALF IGIPLGIIAG VMRGKWADIA ISTVALIGFS IPVFWLALLL MLFFSLHLGW LPVSGRFDLL YQVKPVTGLA LVDAWLSPSP YRNEMMLSAL QHMILPITAL AVAPTTEVIR LMRTSTDDVI GQNYIKAAAT RGLSRFTIIR RHVLHNALPP IIPKLGLQFS TMLTLAMITE VVFNWPGLGR WLINAIRQQD YAAISAGVMV VGSLVIVINV LSDILGAMMT PLKHKEWYAL R
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