Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1782 |
Symbol | sapC |
ID | 5385572 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 2059668 |
End bp | 2060558 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640864765 |
Product | peptide ABC transporter, permease protein SapC |
Protein accession | YP_001400757 |
Protein GI | 153950395 |
COG category | [V] Defense mechanisms |
COG ID | [COG4171] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 48 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCTTCG ATAATGTCTA CCGCGAAAAG AAAATGCCCA GCCCATTGCT GTATACCTGG CGTCTTTTCT CTTCTGATGG CCTGGCGATG GTGGGTTTCT ACGGCGTCTT GGGTTTATTA TTGCTGTGTC TGTTGGGGAG CACGCTTGCG CCTTATACTC TCGATCAACA GTTTTTAGGC TATCAGCTAT TGCCACCTTC TTGGTCACGT TATGGCAATG TTTCCTTCTT CCTAGGGACC GATGACCTCG GTCGTGATGT ATTGAGCCGC TTACTGACAG GTACCGCGTC TACTTATGGC TCAGCGCTCC TGGTCACCGT AGCTGCGGCG TTGTGTGCCA TTGTTCTCGG TGTATTTGCC GGTATCACCC GTGGTTTGCG GTCAGCGATC CTTAATCATG TGCTGGATAC ACTGCTCTCA ATACCTTCAC TGCTGTTAGC CATCATCGTG GTCGCCTTTG TCGGGCCAAG TTTGGAACAT GCGATGTTTG CCGTTTGGCT GGCGCTGTTA CCACGAATGG TGCGAACCAT TTATAGCGCA GTGCATGATG AGCTTGATAA AGAATATGTG ATTGCAGCCC GTCTGGACGG CGCATCAACA CCGCATATTC TGGCCTACGC CATCTTGCCG AATATCGCCT CAGTCCTGGT CACTGAGTTT ACCCGAGCGT TATCAATGGC GATCCTGGAT ATTGCCGCAT TAGGTTTCCT TGACCTCGGC GCACAATTAC CCTCTCCCGA ATGGGGAGCA ATGCTCGGTG ATTCGCTGGA TTTGGTTTAT GTCGCACCAT GGACCGTGAT GCTGCCAGGC GGCGCAATTT TGGTTAGTGT ACTGTTGGTT AATCTGCTGG GTGATGGTAT GCGCCGTGCC ATTAATGCGG GGGTGGAATA A
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Protein sequence | MPFDNVYREK KMPSPLLYTW RLFSSDGLAM VGFYGVLGLL LLCLLGSTLA PYTLDQQFLG YQLLPPSWSR YGNVSFFLGT DDLGRDVLSR LLTGTASTYG SALLVTVAAA LCAIVLGVFA GITRGLRSAI LNHVLDTLLS IPSLLLAIIV VAFVGPSLEH AMFAVWLALL PRMVRTIYSA VHDELDKEYV IAARLDGAST PHILAYAILP NIASVLVTEF TRALSMAILD IAALGFLDLG AQLPSPEWGA MLGDSLDLVY VAPWTVMLPG GAILVSVLLV NLLGDGMRRA INAGVE
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